#=GENOME_DIFF	1.0
#=AUTHOR	
SNP	725	228	REL606	1249	T	aa_new_seq=L	aa_position=305	aa_ref_seq=P	codon_new_seq=CTG	codon_position=2	codon_ref_seq=CCG	gene_list=thrA	gene_name=thrA	gene_position=914	gene_product=bifunctional aspartokinase I/homeserine dehydrogenase I	gene_strand=>	locus_tag=ECB_00002	snp_type=nonsynonymous
MOB	711	13,3	REL606	305569	IS1	-1	9	gene_list=yahA	gene_name=yahA	gene_position=coding (550-558/1089 nt)	gene_product=predicted DNA-binding transcriptional regulator	gene_strand=>	locus_tag=ECB_00271
SNP	726	249	REL606	307594	T	aa_new_seq=G	aa_position=26	aa_ref_seq=G	codon_new_seq=GGA	codon_position=3	codon_ref_seq=GGG	gene_list=yahC	gene_name=yahC	gene_position=78	gene_product=predicted inner membrane protein	gene_strand=<	locus_tag=ECB_00273	snp_type=synonymous
DEL	707	261,23	REL606	474383	9	gene_list=ybaL	gene_name=ybaL	gene_position=coding (915-923/1677 nt)	gene_product=predicted transporter with NAD(P)-binding Rossmann-fold domain	gene_strand=<	locus_tag=ECB_00429
SNP	727	281	REL606	561176	T	gene_name=ompT/envY	gene_position=intergenic (-192/+322)	gene_product=outer membrane protease VII (outer membrane protein 3b)/DNA-binding transcriptional activator of porin biosynthesis	locus_tag=ECB_00519/ECB_00520	snp_type=intergenic
MOB	712	11,24	REL606	641158	IS150	-1	4	gene_list=ybeM	gene_name=ybeM	gene_position=coding (546-549/789 nt)	gene_product=putative NAD(P)-binding amidase-type enzyme YbeM (C-N hydrolase family)	gene_strand=>	locus_tag=ECB_00595
SNP	728	303	REL606	650942	T	aa_new_seq=R	aa_position=120	aa_ref_seq=W	codon_new_seq=AGG	codon_position=1	codon_ref_seq=TGG	gene_list=ybeA	gene_name=ybeA	gene_position=358	gene_product=hypothetical protein	gene_strand=<	locus_tag=ECB_00605	snp_type=nonsynonymous
SNP	729	304	REL606	651601	A	aa_new_seq=L	aa_position=7	aa_ref_seq=Q	codon_new_seq=CTG	codon_position=2	codon_ref_seq=CAG	gene_list=ybeB	gene_name=ybeB	gene_position=20	gene_product=hypothetical protein	gene_strand=<	locus_tag=ECB_00606	snp_type=nonsynonymous
SNP	730	338	REL606	735668	T	gene_name=gltA/sdhC	gene_position=intergenic (-409/-300)	gene_product=citrate synthase/succinate dehydrogenase cytochrome b556 large membrane subunit	locus_tag=ECB_00680/ECB_00681	snp_type=intergenic
MOB	713	27,2	REL606	835448	IS150	1	3	gene_list=ybiN	gene_name=ybiN	gene_position=coding (492-494/927 nt)	gene_product=predicted SAM-dependent methyltransferase	gene_strand=>	locus_tag=ECB_00774
SNP	731	352	REL606	866522	C	aa_new_seq=A	aa_position=247	aa_ref_seq=D	codon_new_seq=GCT	codon_position=2	codon_ref_seq=GAT	gene_list=yliE	gene_name=yliE	gene_position=740	gene_product=conserved inner membrane protein	gene_strand=>	locus_tag=ECB_00800	snp_type=nonsynonymous
MOB	714	22,15	REL606	970687	IS150	1	3	gene_name=pflB/focA	gene_position=intergenic (-40/+13)	gene_product=pyruvate formate lyase I/formate transporter	locus_tag=ECB_00907/ECB_00908	snp_type=intergenic
SNP	732	360	REL606	999840	T	aa_new_seq=*	aa_position=568	aa_ref_seq=Q	codon_new_seq=TAG	codon_position=1	codon_ref_seq=CAG	gene_list=ycbB	gene_name=ycbB	gene_position=1702	gene_product=predicted carboxypeptidase	gene_strand=>	locus_tag=ECB_00929	snp_type=nonsynonymous
SNP	733	361	REL606	1089367	A	aa_new_seq=V	aa_position=310	aa_ref_seq=A	codon_new_seq=GTC	codon_position=2	codon_ref_seq=GCC	gene_list=ycdM	gene_name=ycdM	gene_position=929	gene_product=predicted monooxygenase	gene_strand=<	locus_tag=ECB_01015	snp_type=nonsynonymous
MOB	715	31,30	REL606	1101970	IS150	-1	3	gene_list=phoH	gene_name=phoH	gene_position=coding (694-696/1065 nt)	gene_product=conserved protein with nucleoside triphosphate hydrolase domain	gene_strand=>	locus_tag=ECB_01022
SNP	734	369	REL606	1156460	C	aa_new_seq=R	aa_position=826	aa_ref_seq=M	codon_new_seq=AGG	codon_position=2	codon_ref_seq=ATG	gene_list=rne	gene_name=rne	gene_position=2477	gene_product=fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein	gene_strand=<	locus_tag=ECB_01080	snp_type=nonsynonymous
SNP	735	370	REL606	1166950	T	aa_new_seq=I	aa_position=148	aa_ref_seq=T	codon_new_seq=ATT	codon_position=2	codon_ref_seq=ACT	gene_list=fabF	gene_name=fabF	gene_position=443	gene_product=3-oxoacyl-(acyl carrier protein) synthase	gene_strand=>	locus_tag=ECB_01091	snp_type=nonsynonymous
SNP	736	385	REL606	1284313	A	aa_new_seq=Y	aa_position=187	aa_ref_seq=C	codon_new_seq=TAC	codon_position=2	codon_ref_seq=TGC	gene_list=narH	gene_name=narH	gene_position=560	gene_product=nitrate reductase 1, beta (Fe-S) subunit	gene_strand=>	locus_tag=ECB_01203	snp_type=nonsynonymous
MOB	716	12,7	REL606	1305149	IS186	1	7	del_end=1	gene_list=cls	gene_name=cls	gene_position=coding (1085-1091/1461 nt)	gene_product=cardiolipin synthetase	gene_strand=<	locus_tag=ECB_01223
SNP	737	390	REL606	1329308	T	gene_name=yciN/topA	gene_position=intergenic (-268/-112)	gene_product=hypothetical protein/DNA topoisomerase I	locus_tag=ECB_01249/ECB_01250	snp_type=intergenic
SNP	738	391	REL606	1330018	A	aa_new_seq=E	aa_position=200	aa_ref_seq=A	codon_new_seq=GAG	codon_position=2	codon_ref_seq=GCG	gene_list=topA	gene_name=topA	gene_position=599	gene_product=DNA topoisomerase I	gene_strand=>	locus_tag=ECB_01250	snp_type=nonsynonymous
MOB	717	21,29	REL606	1462251	IS150	-1	4	gene_name=mokB/trg	gene_position=intergenic (-13/-325)	gene_product=regulatory peptide/methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor	locus_tag=ECB_01377/ECB_01378	snp_type=intergenic
DEL	708	452	REL606	1609175	7554	between=IS3	gene_name=ybcW–[ECB_01526]	gene_product=ybcW, gnsB, ynfN, ECB_01516, cspI, ydfP, ydfQ, ydfR, essQ, ECB_01522, ECB_01523, insE-4, insF-4, [ECB_01526]	locus_tag=[ECB_01513]–[ECB_01526]
SNP	739	454	REL606	1681772	C	aa_new_seq=R	aa_position=10	aa_ref_seq=W	codon_new_seq=CGG	codon_position=1	codon_ref_seq=TGG	gene_list=blr	gene_name=blr	gene_position=28	gene_product=beta-lactam resistance membrane protein	gene_strand=>	locus_tag=ECB_01594	snp_type=nonsynonymous
MOB	718	26,10	REL606	1695703	IS186	-1	7	gene_list=ydhH	gene_name=ydhH	gene_position=coding (1088-1094/1110 nt)	gene_product=anhydro-N-acetylmuramic acid kinase	gene_strand=<	locus_tag=ECB_01610
SNP	740	456	REL606	1701071	T	aa_new_seq=L	aa_position=586	aa_ref_seq=R	codon_new_seq=CTC	codon_position=2	codon_ref_seq=CGC	gene_list=ydhK	gene_name=ydhK	gene_position=1757	gene_product=conserved inner membrane protein	gene_strand=>	locus_tag=ECB_01615	snp_type=nonsynonymous
SNP	741	457	REL606	1733865	T	aa_new_seq=S	aa_position=301	aa_ref_seq=A	codon_new_seq=TCC	codon_position=1	codon_ref_seq=GCC	gene_list=pykF	gene_name=pykF	gene_position=901	gene_product=pyruvate kinase	gene_strand=>	locus_tag=ECB_01645	snp_type=nonsynonymous
SNP	742	458	REL606	1734007	G	aa_new_seq=G	aa_position=348	aa_ref_seq=D	codon_new_seq=GGC	codon_position=2	codon_ref_seq=GAC	gene_list=pykF	gene_name=pykF	gene_position=1043	gene_product=pyruvate kinase	gene_strand=>	locus_tag=ECB_01645	snp_type=nonsynonymous
MOB	719	17,16	REL606	1803267	IS1	-1	9	gene_list=astE	gene_name=astE	gene_position=coding (914-922/969 nt)	gene_product=succinylglutamate desuccinylase	gene_strand=<	locus_tag=ECB_01713
SNP	743	460	REL606	1917131	A	aa_new_seq=N	aa_position=303	aa_ref_seq=D	codon_new_seq=AAC	codon_position=1	codon_ref_seq=GAC	gene_list=pykA	gene_name=pykA	gene_position=907	gene_product=pyruvate kinase	gene_strand=>	locus_tag=ECB_01825	snp_type=nonsynonymous
SNP	744	467	REL606	2017253	C	aa_new_seq=D	aa_position=85	aa_ref_seq=Y	codon_new_seq=GAC	codon_position=1	codon_ref_seq=TAC	gene_list=yeeF	gene_name=yeeF	gene_position=253	gene_product=predicted amino-acid transporter	gene_strand=<	locus_tag=ECB_01917	snp_type=nonsynonymous
SNP	745	478	REL606	2056051	G	aa_new_seq=L	aa_position=16	aa_ref_seq=L	codon_new_seq=CTA	codon_position=1	codon_ref_seq=TTA	gene_list=cpsG	gene_name=cpsG	gene_position=46	gene_product=phosphomannomutase	gene_strand=<	locus_tag=ECB_01954	snp_type=synonymous
SNP	746	499	REL606	2275076	G	aa_new_seq=H	aa_position=474	aa_ref_seq=Q	codon_new_seq=CAC	codon_position=3	codon_ref_seq=CAA	gene_list=yfaQ	gene_name=yfaQ	gene_position=1422	gene_product=hypothetical protein	gene_strand=<	locus_tag=ECB_02153	snp_type=nonsynonymous
MOB	720	9,28	REL606	2283472	IS150	-1	3	gene_name=yfaA/gyrA	gene_position=intergenic (-128/+19)	gene_product=hypothetical protein/DNA gyrase subunit A	locus_tag=ECB_02156/ECB_02157	snp_type=intergenic
MOB	721	33,36	REL606	2448493	IS186	1	6	gene_name=nupC/yfeA	gene_position=intergenic (+24/+21)	gene_product=nucleoside (except guanosine) transporter/predicted diguanylate cyclase	locus_tag=ECB_02302/ECB_02303	snp_type=intergenic
MOB	722	8,25	REL606	2522612	IS186	1	6	gene_list=hyfA	gene_name=hyfA	gene_position=coding (584-589/618 nt)	gene_product=hydrogenase 4, 4Fe-4S subunit	gene_strand=>	locus_tag=ECB_02373
SNP	747	529	REL606	2765962	C	aa_new_seq=M	aa_position=68	aa_ref_seq=I	codon_new_seq=ATG	codon_position=3	codon_ref_seq=ATT	gene_list=ygbO	gene_name=ygbO	gene_position=204	gene_product=tRNA pseudouridine synthase D	gene_strand=<	locus_tag=ECB_02595	snp_type=nonsynonymous
SNP	748	530	REL606	2772044	G	aa_new_seq=M	aa_position=201	aa_ref_seq=I	codon_new_seq=ATG	codon_position=3	codon_ref_seq=ATT	gene_list=iap	gene_name=iap	gene_position=603	gene_product=aminopeptidase in alkaline phosphatase isozyme conversion	gene_strand=>	locus_tag=ECB_02603	snp_type=nonsynonymous
SNP	749	544	REL606	2991214	C	gene_name=mltC/nupG	gene_position=intergenic (+41/-161)	gene_product=membrane-bound lytic murein transglycosylase C/nucleoside transporter	locus_tag=ECB_02793/ECB_02794	snp_type=intergenic
MOB	723	18,4	REL606	3036431	IS150	1	3	gene_list=ECB_02837	gene_name=ECB_02837	gene_position=coding (502-504/1494 nt)	gene_product=hypothetical type II secretion protein GspE	gene_strand=<	locus_tag=ECB_02837
SNP	750	550	REL606	3059382	T	aa_new_seq=S	aa_position=71	aa_ref_seq=A	codon_new_seq=TCC	codon_position=1	codon_ref_seq=GCC	gene_list=ECB_02852	gene_name=ECB_02852	gene_position=211	gene_product=conserved hypothetical protein	gene_strand=>	locus_tag=ECB_02852	snp_type=nonsynonymous
SNP	751	553	REL606	3107610	A	aa_new_seq=I	aa_position=99	aa_ref_seq=I	codon_new_seq=ATA	codon_position=3	codon_ref_seq=ATT	gene_list=ygiN	gene_name=ygiN	gene_position=297	gene_product=quinol monooxygenase	gene_strand=>	locus_tag=ECB_02901	snp_type=synonymous
SNP	752	554	REL606	3152545	C	aa_new_seq=P	aa_position=88	aa_ref_seq=T	codon_new_seq=CCC	codon_position=1	codon_ref_seq=ACC	gene_list=ygjG	gene_name=ygjG	gene_position=262	gene_product=putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent	gene_strand=>	locus_tag=ECB_02942	snp_type=nonsynonymous
SNP	753	555	REL606	3249544	T	aa_new_seq=M	aa_position=569	aa_ref_seq=V	codon_new_seq=ATT	codon_position=1	codon_ref_seq=GTT	gene_list=infB	gene_name=infB	gene_position=1705	gene_product=translation initiation factor IF-2	gene_strand=<	locus_tag=ECB_03035	snp_type=nonsynonymous
SNP	754	558	REL606	3289548	A	gene_name=yhcC/gltB	gene_position=intergenic (-263/-319)	gene_product=predicted Fe-S oxidoreductase/glutamate synthase, large subunit	locus_tag=ECB_03076/ECB_03077	snp_type=intergenic
SNP	755	567	REL606	3373799	C	aa_new_seq=V	aa_position=83	aa_ref_seq=F	codon_new_seq=GTC	codon_position=1	codon_ref_seq=TTC	gene_list=rplF	gene_name=rplF	gene_position=247	gene_product=50S ribosomal protein L6	gene_strand=<	locus_tag=ECB_03156	snp_type=nonsynonymous
SNP	756	574	REL606	3414091	C	aa_new_seq=Q	aa_position=23	aa_ref_seq=K	codon_new_seq=CAG	codon_position=1	codon_ref_seq=AAG	gene_list=crp	gene_name=crp	gene_position=67	gene_product=DNA-binding transcriptional dual regulator	gene_strand=>	locus_tag=ECB_03208	snp_type=nonsynonymous
SNP	757	576	REL606	3482231	T	aa_new_seq=*	aa_position=183	aa_ref_seq=Q	codon_new_seq=TAA	codon_position=1	codon_ref_seq=CAA	gene_list=malT	gene_name=malT	gene_position=547	gene_product=transcriptional regulator MalT	gene_strand=>	locus_tag=ECB_03270	snp_type=nonsynonymous
SNP	758	577	REL606	3489219	A	gene_name=glpR/glpG	gene_position=intergenic (-13/+4)	gene_product=DNA-binding transcriptional repressor/predicted intramembrane serine protease	locus_tag=ECB_03274/ECB_03275	snp_type=intergenic
SNP	759	578	REL606	3499809	A	aa_new_seq=I	aa_position=332	aa_ref_seq=S	codon_new_seq=ATC	codon_position=2	codon_ref_seq=AGC	gene_list=glgC	gene_name=glgC	gene_position=995	gene_product=glucose-1-phosphate adenylyltransferase	gene_strand=<	locus_tag=ECB_03282	snp_type=nonsynonymous
DEL	760	579	REL606	3528481	1	gene_name=livK/yhhK	gene_position=intergenic (-247/-177)	gene_product=leucine transporter subunit/hypothetical protein	locus_tag=ECB_03307/ECB_03308	snp_type=intergenic
SNP	761	637	REL606	3710152	T	aa_new_seq=S	aa_position=346	aa_ref_seq=A	codon_new_seq=TCA	codon_position=1	codon_ref_seq=GCA	gene_list=mtlD	gene_name=mtlD	gene_position=1036	gene_product=mannitol-1-phosphate 5-dehydrogenase	gene_strand=>	locus_tag=ECB_03455	snp_type=nonsynonymous
DEL	709	639,32	REL606	3755753	3	gene_list=yicC	gene_name=yicC	gene_position=coding (722-724/864 nt)	gene_product=hypothetical protein	gene_strand=>	locus_tag=ECB_03501
DEL	710	642,19	REL606	3894997	5627	gene_name=rbsD–[rbsR]	gene_product=rbsD, rbsA, rbsC, rbsB, rbsK, [rbsR]	locus_tag=[ECB_03634]–[ECB_03639]	mediated=IS150
SNP	762	659	REL606	4044893	G	aa_new_seq=H	aa_position=193	aa_ref_seq=N	codon_new_seq=CAT	codon_position=1	codon_ref_seq=AAT	gene_list=yihP	gene_name=yihP	gene_position=577	gene_product=predicted transporter	gene_strand=<	locus_tag=ECB_03762	snp_type=nonsynonymous
SNP	763	661	REL606	4100211	T	aa_new_seq=L	aa_position=340	aa_ref_seq=F	codon_new_seq=TTA	codon_position=3	codon_ref_seq=TTC	gene_list=hslU	gene_name=hslU	gene_position=1020	gene_product=ATP-dependent protease ATP-binding subunit	gene_strand=<	locus_tag=ECB_03816	snp_type=nonsynonymous
SNP	764	662	REL606	4108412	T	aa_new_seq=M	aa_position=31	aa_ref_seq=L	codon_new_seq=ATT	codon_position=1	codon_ref_seq=CTT	gene_list=metJ	gene_name=metJ	gene_position=91	gene_product=transcriptional repressor protein MetJ	gene_strand=<	locus_tag=ECB_03824	snp_type=nonsynonymous
SNP	765	680	REL606	4201937	T	aa_new_seq=D	aa_position=208	aa_ref_seq=G	codon_new_seq=GAT	codon_position=2	codon_ref_seq=GGT	gene_list=iclR	gene_name=iclR	gene_position=623	gene_product=DNA-binding transcriptional repressor	gene_strand=<	locus_tag=ECB_03890	snp_type=nonsynonymous
SNP	766	681	REL606	4234737	C	aa_new_seq=R	aa_position=221	aa_ref_seq=L	codon_new_seq=CGC	codon_position=2	codon_ref_seq=CTC	gene_list=plsB	gene_name=plsB	gene_position=662	gene_product=glycerol-3-phosphate acyltransferase	gene_strand=<	locus_tag=ECB_03913	snp_type=nonsynonymous
MOB	724	20,6	REL606	4252526	IS150	1	3	gene_list=uvrA	gene_name=uvrA	gene_position=coding (276-278/2823 nt)	gene_product=excinuclease ABC subunit A	gene_strand=<	locus_tag=ECB_03930
SNP	767	682	REL606	4266388	T	gene_name=acs/nrfA	gene_position=intergenic (-84/-309)	gene_product=acetyl-coenzyme A synthetase/nitrite reductase, formate-dependent, cytochrome	locus_tag=ECB_03941/ECB_03942	snp_type=intergenic
DEL	768	700	REL606	4558781	1	gene_list=hsdS	gene_name=hsdS	gene_position=coding (657/1425 nt)	gene_product=specificity determinant for hsdM and hsdR	gene_strand=<	locus_tag=ECB_04214
SNP	769	706	REL606	4616409	G	aa_new_seq=C	aa_position=294	aa_ref_seq=Y	codon_new_seq=TGC	codon_position=2	codon_ref_seq=TAC	gene_list=nadR	gene_name=nadR	gene_position=881	gene_product=nicotinamide-nucleotide adenylyltransferase	gene_strand=>	locus_tag=ECB_04266	snp_type=nonsynonymous
RA	228		REL606	1249	0	C	T	frequency=1	new_cov=28/31	quality=191.2	ref_cov=0/0	tot_cov=28/32
RA	249		REL606	307594	0	C	T	frequency=1	new_cov=31/24	quality=164.8	ref_cov=0/0	tot_cov=31/24
RA	266		REL606	554865	0	C	A	deleted=1	frequency=1	new_cov=1/0	quality=-6.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	267		REL606	554878	0	C	T	deleted=1	frequency=1	new_cov=0/1	quality=-3.4	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	268		REL606	555152	0	C	A	deleted=1	frequency=1	new_cov=1/0	quality=-6.0	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	269		REL606	555153	0	G	C	deleted=1	frequency=1	new_cov=1/0	quality=-6.1	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	270		REL606	555259	0	G	C	deleted=1	frequency=1	new_cov=0/1	quality=-6.2	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	271		REL606	555262	0	G	A	deleted=1	frequency=1	new_cov=0/1	quality=-6.4	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	281		REL606	561176	0	G	T	frequency=1	new_cov=16/14	quality=97.6	ref_cov=0/0	tot_cov=16/14
RA	303		REL606	650942	0	A	T	frequency=1	new_cov=26/38	quality=189.8	ref_cov=0/0	tot_cov=26/38
RA	304		REL606	651601	0	T	A	frequency=1	new_cov=13/12	quality=79.5	ref_cov=0/0	tot_cov=13/12
RA	338		REL606	735668	0	A	T	frequency=1	new_cov=19/11	quality=90.1	ref_cov=0/0	tot_cov=19/11
RA	352		REL606	866522	0	A	C	frequency=1	new_cov=22/13	quality=107.0	ref_cov=0/0	tot_cov=22/14
RA	360		REL606	999840	0	C	T	frequency=1	new_cov=22/39	quality=186.2	ref_cov=0/0	tot_cov=22/39
RA	361		REL606	1089367	0	G	A	frequency=1	new_cov=39/28	quality=196.5	ref_cov=0/0	tot_cov=39/28
RA	369		REL606	1156460	0	A	C	frequency=1	new_cov=49/34	quality=245.0	ref_cov=0/0	tot_cov=49/34
RA	370		REL606	1166950	0	C	T	frequency=1	new_cov=14/37	quality=163.7	ref_cov=0/0	tot_cov=14/37
RA	385		REL606	1284313	0	G	A	frequency=1	new_cov=33/22	quality=160.9	ref_cov=0/0	tot_cov=33/22
RA	390		REL606	1329308	0	G	T	frequency=1	new_cov=20/15	quality=110.2	ref_cov=0/0	tot_cov=20/15
RA	391		REL606	1330018	0	C	A	frequency=1	new_cov=19/26	quality=121.4	ref_cov=0/0	tot_cov=19/26
RA	454		REL606	1681772	0	T	C	frequency=1	new_cov=27/22	quality=147.1	ref_cov=0/0	tot_cov=27/22
RA	456		REL606	1701071	0	G	T	frequency=1	new_cov=33/34	quality=205.6	ref_cov=0/0	tot_cov=33/34
RA	457		REL606	1733865	0	G	T	frequency=1	new_cov=32/24	quality=170.7	ref_cov=0/0	tot_cov=32/24
RA	458		REL606	1734007	0	A	G	frequency=1	new_cov=30/26	quality=162.4	ref_cov=1/0	tot_cov=31/26
RA	460		REL606	1917131	0	G	A	frequency=1	new_cov=56/33	quality=285.8	ref_cov=0/0	tot_cov=56/33
RA	467		REL606	2017253	0	A	C	frequency=1	new_cov=28/11	quality=111.5	ref_cov=1/0	tot_cov=29/11
RA	475		REL606	2056025	0	A	G	deleted=1	frequency=1	new_cov=0/1	quality=-4.2	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	478		REL606	2056051	0	A	G	frequency=1	new_cov=13/20	quality=94.8	ref_cov=0/0	tot_cov=13/20
RA	485		REL606	2107679	0	C	A	deleted=1	frequency=1	new_cov=1/0	quality=-6.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	486		REL606	2119618	0	G	T	deleted=1	frequency=1	new_cov=0/1	quality=-6.5	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	487		REL606	2122430	0	A	C	deleted=1	frequency=1	new_cov=0/2	quality=-0.0	ref_cov=0/0	reject=EVALUE	tot_cov=0/2
RA	499		REL606	2275076	0	T	G	frequency=1	new_cov=17/23	quality=112.9	ref_cov=0/0	tot_cov=17/23
RA	511		REL606	2650303	0	C	.	frequency=1	new_cov=0/1	quality=-1.4	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	512		REL606	2650323	0	A	C	frequency=1	new_cov=0/1	quality=-5.7	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	513		REL606	2650328	0	C	A	frequency=1	new_cov=0/1	quality=-4.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	514		REL606	2650889	1	.	T	frequency=1	new_cov=0/1	quality=-5.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	515		REL606	2650893	0	A	C	frequency=1	new_cov=0/1	quality=-6.1	ref_cov=0/1	reject=EVALUE	tot_cov=0/2
RA	516		REL606	2650917	0	G	T	frequency=1	new_cov=0/1	quality=-4.0	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	529		REL606	2765962	0	A	C	frequency=1	new_cov=23/24	quality=139.1	ref_cov=0/0	tot_cov=23/24
RA	530		REL606	2772044	0	T	G	frequency=1	new_cov=21/17	quality=113.8	ref_cov=0/0	tot_cov=21/17
RA	534		REL606	2775625	0	A	.	frequency=1	new_cov=0/1	quality=-0.6	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	544		REL606	2991214	0	T	C	frequency=1	new_cov=17/20	quality=110.8	ref_cov=0/0	tot_cov=17/20
RA	550		REL606	3059382	0	G	T	frequency=1	new_cov=24/33	quality=178.7	ref_cov=0/0	tot_cov=24/33
RA	553		REL606	3107610	0	T	A	frequency=1	new_cov=20/27	quality=137.0	ref_cov=0/0	tot_cov=20/28
RA	554		REL606	3152545	0	A	C	frequency=1	new_cov=20/11	quality=82.7	ref_cov=0/0	tot_cov=20/11
RA	555		REL606	3249544	0	C	T	frequency=1	new_cov=23/40	quality=195.1	ref_cov=0/0	tot_cov=23/40
RA	558		REL606	3289548	0	G	A	frequency=1	new_cov=18/32	quality=167.7	ref_cov=0/0	tot_cov=18/32
RA	567		REL606	3373799	0	A	C	frequency=1	new_cov=27/28	quality=163.1	ref_cov=0/0	tot_cov=27/28
RA	574		REL606	3414091	0	A	C	frequency=1	new_cov=35/28	quality=193.0	ref_cov=0/0	tot_cov=35/28
RA	576		REL606	3482231	0	C	T	frequency=1	new_cov=24/25	quality=144.3	ref_cov=0/0	tot_cov=24/25
RA	577		REL606	3489219	0	G	A	frequency=1	new_cov=14/26	quality=135.5	ref_cov=0/0	tot_cov=14/26
RA	578		REL606	3499809	0	C	A	frequency=1	new_cov=28/24	quality=166.1	ref_cov=0/0	tot_cov=28/24
RA	579		REL606	3528481	0	A	.	frequency=1	new_cov=13/18	quality=177.9	ref_cov=0/0	tot_cov=13/18
RA	637		REL606	3710152	0	G	T	frequency=1	new_cov=25/30	quality=169.3	ref_cov=0/0	tot_cov=25/30
RA	659		REL606	4044893	0	T	G	frequency=1	new_cov=27/36	quality=195.5	ref_cov=1/0	tot_cov=28/36
RA	661		REL606	4100211	0	G	T	frequency=1	new_cov=32/28	quality=193.2	ref_cov=0/0	tot_cov=32/28
RA	662		REL606	4108412	0	G	T	frequency=1	new_cov=31/25	quality=196.0	ref_cov=0/0	tot_cov=31/25
RA	680		REL606	4201937	0	C	T	frequency=1	new_cov=25/44	quality=224.8	ref_cov=0/0	tot_cov=25/44
RA	681		REL606	4234737	0	A	C	frequency=1	new_cov=28/14	quality=131.9	ref_cov=0/0	tot_cov=28/14
RA	682		REL606	4266388	0	G	T	frequency=1	new_cov=16/29	quality=140.3	ref_cov=0/0	tot_cov=16/29
RA	700		REL606	4558781	0	T	.	frequency=1	new_cov=4/3	quality=30.7	ref_cov=0/0	tot_cov=4/3
RA	706		REL606	4616409	0	A	G	frequency=1	new_cov=21/36	quality=168.0	ref_cov=0/0	tot_cov=21/36
MC	230		REL606	16975	17044	0	0	left_inside_cov=0	left_outside_cov=61	right_inside_cov=0	right_outside_cov=33
MC	261		REL606	474383	474391	0	0	left_inside_cov=0	left_outside_cov=53	right_inside_cov=0	right_outside_cov=52
MC	273		REL606	546956	555932	749	306	left_inside_cov=10	left_outside_cov=11	right_inside_cov=10	right_outside_cov=11
MC	452		REL606	1607944	1616700	1232	3783	left_inside_cov=8	left_outside_cov=11	right_inside_cov=9	right_outside_cov=11
MC	476		REL606	2032757	2056027	4	1	left_inside_cov=7	left_outside_cov=11	right_inside_cov=9	right_outside_cov=11
MC	489		REL606	2100305	2122434	2	7	left_inside_cov=9	left_outside_cov=12	right_inside_cov=9	right_outside_cov=11
MC	639		REL606	3755753	3755755	0	0	left_inside_cov=0	left_outside_cov=43	right_inside_cov=0	right_outside_cov=40
MC	642		REL606	3893582	3900623	1412	0	left_inside_cov=10	left_outside_cov=13	right_inside_cov=0	right_outside_cov=61
JC	34		REL606	1	1	REL606	4629812	-1	0	alignment_overlap=0	circular_chromosome=1	coverage_minus=14	coverage_plus=20	flanking_left=36	flanking_right=36	key=REL606__1__1__REL606__4629812__0__0____36__36__0__0	max_left=35	max_left_minus=32	max_left_plus=35	max_min_left=17	max_min_left_minus=17	max_min_left_plus=17	max_min_right=14	max_min_right_minus=14	max_min_right_plus=13	max_right=35	max_right_minus=35	max_right_plus=31	min_overlap_score=297	pos_hash_score=27	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=34	total_reads=34
JC	37		REL606	9904	-1	REL606	3549926	-1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=44	flanking_left=36	flanking_right=36	key=REL606__9904__0__REL606__3549929__0__3____36__36__0__0	max_left=12	max_left_minus=0	max_left_plus=12	max_min_left=12	max_min_left_minus=0	max_min_left_plus=12	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=32	max_right_minus=0	max_right_plus=32	min_overlap_score=261	pos_hash_score=15	reject=NJ	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=44	total_reads=44
JC	7		REL606	15386	1	REL606	1305155	-1	0	alignment_overlap=3	coverage_minus=17	coverage_plus=27	flanking_left=36	flanking_right=36	key=REL606__15386__1__REL606__1305158__0__3____36__36__0__1	max_left=32	max_left_minus=32	max_left_plus=32	max_min_left=16	max_min_left_minus=15	max_min_left_plus=16	max_min_right=14	max_min_right_minus=11	max_min_right_plus=14	max_right=31	max_right_minus=31	max_right_plus=28	min_overlap_score=377	pos_hash_score=31	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=44	total_reads=82
JC	26		REL606	15386	1	REL606	1695703	1	0	alignment_overlap=4	coverage_minus=15	coverage_plus=17	flanking_left=36	flanking_right=36	key=REL606__15385__1__REL606__1695700__1__4____36__36__1__0	max_left=31	max_left_minus=31	max_left_plus=30	max_min_left=15	max_min_left_minus=15	max_min_left_plus=10	max_min_right=16	max_min_right_minus=16	max_min_right_plus=12	max_right=31	max_right_minus=31	max_right_plus=31	min_overlap_score=216	pos_hash_score=29	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=32	total_reads=48
JC	36		REL606	15386	1	REL606	2448498	-1	0	alignment_overlap=4	coverage_minus=10	coverage_plus=15	flanking_left=36	flanking_right=36	key=REL606__15385__1__REL606__2448501__0__4____36__36__1__0	max_left=30	max_left_minus=30	max_left_plus=30	max_min_left=13	max_min_left_minus=13	max_min_left_plus=8	max_min_right=15	max_min_right_minus=8	max_min_right_plus=15	max_right=31	max_right_minus=31	max_right_plus=30	min_overlap_score=165	pos_hash_score=21	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=25	total_reads=32
JC	215		REL606	15386	1	REL606	815129	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__15386__1__REL606__815126__1__3____36__36__1__0	max_left=28	max_left_minus=0	max_left_plus=28	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=5	max_min_right_minus=0	max_min_right_plus=5	max_right=5	max_right_minus=0	max_right_plus=5	min_overlap_score=5	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	12		REL606	16727	-1	REL606	1305149	1	0	alignment_overlap=1	coverage_minus=21	coverage_plus=28	flanking_left=36	flanking_right=36	key=REL606__16727__0__REL606__1305148__1__1____36__36__1__0	max_left=34	max_left_minus=34	max_left_plus=34	max_min_left=16	max_min_left_minus=16	max_min_left_plus=15	max_min_right=17	max_min_right_minus=14	max_min_right_plus=17	max_right=34	max_right_minus=33	max_right_plus=34	min_overlap_score=386	pos_hash_score=38	side_1_annotate_key=repeat	side_1_overlap=1	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=49	total_reads=68
JC	10		REL606	16728	-1	REL606	1695709	-1	0	alignment_overlap=3	coverage_minus=16	coverage_plus=27	flanking_left=36	flanking_right=36	key=REL606__16728__0__REL606__1695712__0__3____36__36__0__1	max_left=32	max_left_minus=31	max_left_plus=32	max_min_left=15	max_min_left_minus=13	max_min_left_plus=15	max_min_right=16	max_min_right_minus=14	max_min_right_plus=16	max_right=32	max_right_minus=32	max_right_plus=31	min_overlap_score=338	pos_hash_score=35	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=43	total_reads=71
JC	1		REL606	16974	-1	REL606	2774435	1	0	alignment_overlap=5	coverage_minus=24	coverage_plus=19	flanking_left=36	flanking_right=36	key=REL606__16976__0__REL606__2774432__1__5____36__36__0__1	max_left=30	max_left_minus=30	max_left_plus=29	max_min_left=15	max_min_left_minus=15	max_min_left_plus=13	max_min_right=15	max_min_right_minus=15	max_min_right_plus=13	max_right=30	max_right_minus=30	max_right_plus=28	min_overlap_score=311	pos_hash_score=29	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=2	side_2_redundant=1	total_non_overlap_reads=43	total_reads=101
JC	35		REL606	17045	1	REL606	2775877	-1	0	alignment_overlap=2	coverage_minus=12	coverage_plus=15	flanking_left=36	flanking_right=36	key=REL606__17043__1__REL606__2775877__0__2____36__36__0__1	max_left=29	max_left_minus=28	max_left_plus=29	max_min_left=16	max_min_left_minus=11	max_min_left_plus=16	max_min_right=17	max_min_right_minus=7	max_min_right_plus=17	max_right=31	max_right_minus=31	max_right_plus=31	min_overlap_score=235	pos_hash_score=23	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=2	side_2_redundant=1	total_non_overlap_reads=27	total_reads=33
JC	102		REL606	23891	1	REL606	2151694	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__23891__1__REL606__2151694__0__0____36__36__0__1	max_left=33	max_left_minus=33	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=3	max_min_right_minus=3	max_min_right_plus=0	max_right=20	max_right_minus=20	max_right_plus=0	min_overlap_score=19	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=2	total_reads=2
JC	16		REL606	24058	-1	REL606	1803275	-1	0	alignment_overlap=3	coverage_minus=22	coverage_plus=21	flanking_left=36	flanking_right=36	key=REL606__24061__0__REL606__1803275__0__3____36__36__1__0	max_left=32	max_left_minus=32	max_left_plus=30	max_min_left=16	max_min_left_minus=15	max_min_left_plus=16	max_min_right=15	max_min_right_minus=14	max_min_right_plus=15	max_right=32	max_right_minus=32	max_right_plus=30	min_overlap_score=331	pos_hash_score=33	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=3	side_2_redundant=0	total_non_overlap_reads=43	total_reads=64
JC	209		REL606	62419	1	REL606	4224146	-1	0	alignment_overlap=4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__62419__1__REL606__4224150__0__4____36__36__0__1	max_left=3	max_left_minus=3	max_left_plus=0	max_min_left=3	max_min_left_minus=3	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=29	max_right_minus=29	max_right_plus=0	min_overlap_score=3	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=4	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	155		REL606	62426	1	REL606	62436	1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__62426__1__REL606__62436__1__-3__GCC__36__36__0__0	max_left=4	max_left_minus=0	max_left_plus=4	max_min_left=4	max_min_left_minus=0	max_min_left_plus=4	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=32	max_right_minus=0	max_right_plus=32	min_overlap_score=2	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=1	unique_read_sequence=GCC
JC	137		REL606	69368	1	REL606	218939	1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__69368__1__REL606__218939__1__-1__G__36__36__0__0	max_left=6	max_left_minus=6	max_left_plus=0	max_min_left=6	max_min_left_minus=6	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=29	max_right_minus=29	max_right_plus=0	min_overlap_score=6	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	134		REL606	72479	-1	REL606	311803	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__72479__0__REL606__311803__1__0____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	85		REL606	73247	1	REL606	714820	1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=19	flanking_left=36	flanking_right=36	key=REL606__73247__1__REL606__714812__1__8____36__36__0__1	max_left=6	max_left_minus=0	max_left_plus=6	max_min_left=6	max_min_left_minus=0	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=27	max_right_minus=0	max_right_plus=27	min_overlap_score=77	pos_hash_score=9	reject=NJ	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=19	total_reads=5
JC	96		REL606	73247	1	REL606	712949	1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=22	flanking_left=36	flanking_right=36	key=REL606__73247__1__REL606__712941__1__8____36__36__0__1	max_left=6	max_left_minus=0	max_left_plus=6	max_min_left=6	max_min_left_minus=0	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=27	max_right_minus=0	max_right_plus=27	min_overlap_score=81	pos_hash_score=11	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=22	total_reads=3
JC	139		REL606	73247	1	REL606	3702252	1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=20	flanking_left=36	flanking_right=36	key=REL606__73247__1__REL606__3702244__1__8____36__36__0__1	max_left=6	max_left_minus=0	max_left_plus=6	max_min_left=6	max_min_left_minus=0	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=26	max_right_minus=0	max_right_plus=26	min_overlap_score=79	pos_hash_score=10	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=20	total_reads=1
JC	164		REL606	100702	1	REL606	1077800	1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__100702__1__REL606__1077797__1__3____36__36__0__0	max_left=19	max_left_minus=19	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=6	max_min_right_minus=6	max_min_right_plus=0	max_right=6	max_right_minus=6	max_right_plus=0	min_overlap_score=6	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	112		REL606	116600	1	REL606	1512449	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__116600__1__REL606__1512449__1__0____36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=15	max_min_left=15	max_min_left_minus=15	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=21	max_right_minus=21	max_right_plus=21	min_overlap_score=30	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	97		REL606	130150	1	REL606	4427927	1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__130150__1__REL606__4427921__1__6____36__36__0__0	max_left=22	max_left_minus=22	max_left_plus=11	max_min_left=11	max_min_left_minus=0	max_min_left_plus=11	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=15	max_right_minus=1	max_right_plus=15	min_overlap_score=23	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=6	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3
JC	160		REL606	141572	1	REL606	4603902	-1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__141573__1__REL606__4603902__0__1____36__36__1__0	max_left=24	max_left_minus=0	max_left_plus=24	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=11	max_min_right_minus=0	max_min_right_plus=11	max_right=11	max_right_minus=0	max_right_plus=11	min_overlap_score=11	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	62		REL606	178416	-1	REL606	338030	-1	0	alignment_overlap=8	coverage_minus=9	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__178416__0__REL606__338038__0__8____36__36__0__0	max_left=25	max_left_minus=25	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=6	max_min_right_minus=6	max_min_right_plus=0	max_right=6	max_right_minus=6	max_right_plus=0	min_overlap_score=41	pos_hash_score=7	reject=NJ	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=9	total_reads=9
JC	83		REL606	199733	1	REL606	513982	-1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=6	flanking_left=36	flanking_right=36	key=REL606__199733__1__REL606__513991__0__9____36__36__0__0	max_left=11	max_left_minus=0	max_left_plus=11	max_min_left=11	max_min_left_minus=0	max_min_left_plus=11	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=25	max_right_minus=0	max_right_plus=25	min_overlap_score=32	pos_hash_score=6	reject=NJ	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=6	total_reads=6
JC	76		REL606	207099	1	REL606	2464230	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=8	flanking_left=36	flanking_right=36	key=REL606__207099__1__REL606__2464230__0__-4__TGGC__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=112	pos_hash_score=4	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=8	total_reads=7	unique_read_sequence=TGGC
JC	67		REL606	218768	1	REL606	1086275	-1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=8	flanking_left=36	flanking_right=36	key=REL606__218768__1__REL606__1086285__0__10____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=25	max_right_minus=0	max_right_plus=25	min_overlap_score=36	pos_hash_score=5	reject=NJ	side_1_annotate_key=gene	side_1_overlap=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=8	total_reads=8
JC	173		REL606	218928	-1	REL606	218939	1	-3	alignment_overlap=-3	coverage_minus=1	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__218928__0__REL606__218939__1__-3__ATG__36__36__0__0	max_left=32	max_left_minus=32	max_left_plus=4	max_min_left=4	max_min_left_minus=0	max_min_left_plus=4	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=23	max_right_minus=0	max_right_plus=23	min_overlap_score=2	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=1	unique_read_sequence=ATG
JC	171		REL606	252715	-1	REL606	1933196	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__252715__0__REL606__1933196__1__0____36__36__0__0	max_left=4	max_left_minus=0	max_left_plus=4	max_min_left=4	max_min_left_minus=0	max_min_left_plus=4	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=30	max_right_minus=0	max_right_plus=30	min_overlap_score=4	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	109		REL606	253078	-1	REL606	3250195	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__253078__0__REL606__3250195__1__0____36__36__0__0	max_left=14	max_left_minus=0	max_left_plus=14	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=14	max_min_right_minus=0	max_min_right_plus=14	max_right=14	max_right_minus=0	max_right_plus=14	min_overlap_score=28	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	45		REL606	275427	-1	REL606	2459546	-1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=16	flanking_left=36	flanking_right=36	key=REL606__275427__0__REL606__2459554__0__8____36__36__0__0	max_left=7	max_left_minus=0	max_left_plus=7	max_min_left=7	max_min_left_minus=0	max_min_left_plus=7	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=27	max_right_minus=0	max_right_plus=27	min_overlap_score=38	pos_hash_score=8	reject=NJ	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=16	total_reads=16
JC	162		REL606	286120	-1	REL606	1879019	-1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__286120__0__REL606__1879019__0__-1__G__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=0	max_right_plus=19	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	13		REL606	305569	1	REL606	2143831	-1	0	alignment_overlap=4	coverage_minus=31	coverage_plus=20	flanking_left=36	flanking_right=36	key=REL606__305569__1__REL606__2143835__0__4____36__36__0__1	max_left=31	max_left_minus=28	max_left_plus=31	max_min_left=15	max_min_left_minus=15	max_min_left_plus=15	max_min_right=16	max_min_right_minus=16	max_min_right_plus=16	max_right=31	max_right_minus=31	max_right_plus=30	min_overlap_score=455	pos_hash_score=36	side_1_annotate_key=gene	side_1_overlap=4	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=51	total_reads=68
JC	3		REL606	305577	-1	REL606	4521571	1	0	alignment_overlap=3	coverage_minus=21	coverage_plus=22	flanking_left=36	flanking_right=36	key=REL606__305578__0__REL606__4521569__1__3____36__36__0__1	max_left=32	max_left_minus=30	max_left_plus=32	max_min_left=15	max_min_left_minus=14	max_min_left_plus=15	max_min_right=15	max_min_right_minus=15	max_min_right_plus=15	max_right=32	max_right_minus=32	max_right_plus=31	min_overlap_score=362	pos_hash_score=32	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=1	side_2_redundant=1	total_non_overlap_reads=43	total_reads=99
JC	189		REL606	320465	-1	REL606	320487	-1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__320465__0__REL606__320488__0__1____36__36__0__0	max_left=18	max_left_minus=0	max_left_plus=18	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=17	max_min_right_minus=0	max_min_right_plus=17	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	159		REL606	322585	-1	REL606	2144980	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__322585__0__REL606__2144980__0__-4__ATTT__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=ATTT
JC	196		REL606	330032	1	REL606	330430	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__330032__1__REL606__330430__0__-1__G__36__36__0__0	max_left=2	max_left_minus=2	max_left_plus=0	max_min_left=2	max_min_left_minus=2	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=33	max_right_minus=33	max_right_plus=0	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	129		REL606	333743	-1	REL606	2973676	-1	0	alignment_overlap=13	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__333743__0__REL606__2973689__0__13____36__36__0__1	max_left=4	max_left_minus=4	max_left_plus=0	max_min_left=4	max_min_left_minus=4	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=11	max_right_minus=11	max_right_plus=0	min_overlap_score=4	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=13	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	118		REL606	347715	1	REL606	2928102	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__347715__1__REL606__2928102__0__0____36__36__0__1	max_left=11	max_left_minus=11	max_left_plus=0	max_min_left=11	max_min_left_minus=11	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=24	max_right_minus=24	max_right_plus=0	min_overlap_score=11	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	130		REL606	349677	1	REL606	4117896	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__349677__1__REL606__4117895__1__1____36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=19	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	217		REL606	370415	1	REL606	1137332	1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__370415__1__REL606__1137332__1__-1__G__36__36__0__0	max_left=0	max_left_minus=0	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=33	max_right_minus=0	max_right_plus=33	min_overlap_score=0	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	48		REL606	413918	-1	REL606	4141016	-1	0	alignment_overlap=7	coverage_minus=12	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__413918__0__REL606__4141023__0__7____36__36__0__0	max_left=28	max_left_minus=28	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=13	max_min_right_minus=13	max_min_right_plus=0	max_right=13	max_right_minus=13	max_right_plus=0	min_overlap_score=59	pos_hash_score=7	reject=NJ	side_1_annotate_key=gene	side_1_overlap=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=12	total_reads=12
JC	117		REL606	415095	-1	REL606	898223	-1	-4	alignment_overlap=-4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__415095__0__REL606__898223__0__-4__AACA__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=AACA
JC	59		REL606	424922	-1	REL606	3396858	1	0	alignment_overlap=7	coverage_minus=0	coverage_plus=10	flanking_left=36	flanking_right=36	key=REL606__424922__0__REL606__3396851__1__7____36__36__0__0	max_left=7	max_left_minus=0	max_left_plus=7	max_min_left=7	max_min_left_minus=0	max_min_left_plus=7	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=28	max_right_minus=0	max_right_plus=28	min_overlap_score=26	pos_hash_score=8	reject=NJ	side_1_annotate_key=gene	side_1_overlap=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=10	total_reads=10
JC	33		REL606	429502	1	REL606	2448493	1	0	alignment_overlap=5	coverage_minus=7	coverage_plus=19	flanking_left=36	flanking_right=36	key=REL606__429500__1__REL606__2448490__1__5____36__36__1__0	max_left=29	max_left_minus=29	max_left_plus=29	max_min_left=14	max_min_left_minus=14	max_min_left_plus=14	max_min_right=15	max_min_right_minus=15	max_min_right_plus=13	max_right=27	max_right_minus=27	max_right_plus=26	min_overlap_score=216	pos_hash_score=21	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=26	total_reads=39
JC	25		REL606	430844	-1	REL606	2522617	-1	0	alignment_overlap=5	coverage_minus=26	coverage_plus=12	flanking_left=36	flanking_right=36	key=REL606__430846__0__REL606__2522620__0__5____36__36__1__0	max_left=30	max_left_minus=28	max_left_plus=30	max_min_left=15	max_min_left_minus=15	max_min_left_plus=14	max_min_right=15	max_min_right_minus=15	max_min_right_plus=11	max_right=30	max_right_minus=29	max_right_plus=30	min_overlap_score=292	pos_hash_score=27	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=38	total_reads=48
JC	104		REL606	462059	-1	REL606	3092612	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__462059__0__REL606__3092612__1__0____36__36__1__0	max_left=35	max_left_minus=16	max_left_plus=35	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=1	max_right=16	max_right_minus=16	max_right_plus=1	min_overlap_score=18	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=2
JC	220		REL606	465659	-1	REL606	834782	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__465659__0__REL606__834782__0__-4__CAGC__36__36__0__0	max_left=12	max_left_minus=0	max_left_plus=12	max_min_left=12	max_min_left_minus=0	max_min_left_plus=12	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=12	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CAGC
JC	23		REL606	474382	-1	REL606	474392	1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=27	flanking_left=36	flanking_right=36	key=REL606__474382__0__REL606__474392__1__0____36__36__0__0	max_left=35	max_left_minus=35	max_left_plus=31	max_min_left=17	max_min_left_minus=15	max_min_left_plus=17	max_min_right=18	max_min_right_minus=18	max_min_right_plus=18	max_right=24	max_right_minus=21	max_right_plus=24	min_overlap_score=500	pos_hash_score=30	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=43	total_reads=51
JC	199		REL606	480643	1	REL606	2293985	1	0	alignment_overlap=5	coverage_minus=1	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__480648__1__REL606__2293985__1__5____36__36__1__0	max_left=28	max_left_minus=28	max_left_plus=26	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=5	max_min_right_minus=3	max_min_right_plus=5	max_right=5	max_right_minus=3	max_right_plus=5	min_overlap_score=8	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=5	side_2_redundant=0	total_non_overlap_reads=2	total_reads=1
JC	138		REL606	507152	1	REL606	3131099	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__507152__1__REL606__3131099__0__0____36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	77		REL606	512177	1	REL606	4425900	1	0	alignment_overlap=8	coverage_minus=6	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__512177__1__REL606__4425892__1__8____36__36__0__0	max_left=27	max_left_minus=27	max_left_plus=1	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=6	max_min_right_minus=6	max_min_right_plus=0	max_right=27	max_right_minus=6	max_right_plus=27	min_overlap_score=24	pos_hash_score=5	reject=NJ	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=7	total_reads=7
JC	205		REL606	517590	-1	REL606	1686254	-1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__517590__0__REL606__1686262__0__8____36__36__0__0	max_left=7	max_left_minus=0	max_left_plus=7	max_min_left=7	max_min_left_minus=0	max_min_left_plus=7	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=21	max_right_minus=0	max_right_plus=21	min_overlap_score=7	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	66		REL606	518476	-1	REL606	4475825	1	0	alignment_overlap=5	coverage_minus=0	coverage_plus=8	flanking_left=36	flanking_right=36	key=REL606__518476__0__REL606__4475820__1__5____36__36__0__0	max_left=9	max_left_minus=0	max_left_plus=9	max_min_left=9	max_min_left_minus=0	max_min_left_plus=9	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=27	max_right_minus=0	max_right_plus=27	min_overlap_score=54	pos_hash_score=5	reject=NJ	side_1_annotate_key=gene	side_1_overlap=5	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=8	total_reads=8
JC	131		REL606	523507	1	REL606	4245829	1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__523507__1__REL606__4245819__1__10____36__36__0__1	max_left=1	max_left_minus=0	max_left_plus=1	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=25	max_right_minus=0	max_right_plus=25	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=10	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	213		REL606	523507	1	REL606	2187781	1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__523507__1__REL606__2187772__1__9____36__36__0__0	max_left=8	max_left_minus=0	max_left_plus=8	max_min_left=8	max_min_left_minus=0	max_min_left_plus=8	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=0	max_right_plus=19	min_overlap_score=8	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	163		REL606	523520	1	REL606	4005977	-1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__523520__1__REL606__4005977__0__-2__CG__36__36__0__0	max_left=2	max_left_minus=0	max_left_plus=2	max_min_left=2	max_min_left_minus=0	max_min_left_plus=2	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=32	max_right_minus=0	max_right_plus=32	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CG
JC	58		REL606	525317	1	REL606	3498145	1	0	alignment_overlap=4	coverage_minus=0	coverage_plus=10	flanking_left=36	flanking_right=36	key=REL606__525317__1__REL606__3498141__1__4____36__36__0__0	max_left=11	max_left_minus=0	max_left_plus=11	max_min_left=11	max_min_left_minus=0	max_min_left_plus=11	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=30	max_right_minus=0	max_right_plus=30	min_overlap_score=57	pos_hash_score=9	reject=NJ	side_1_annotate_key=gene	side_1_overlap=4	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=10	total_reads=10
JC	120		REL606	542162	-1	REL606	3083334	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__542162__0__REL606__3083334__1__0____36__36__0__0	max_left=20	max_left_minus=20	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	5		REL606	555905	1	REL606	1460160	1	0	alignment_overlap=3	coverage_minus=35	coverage_plus=23	flanking_left=36	flanking_right=36	key=REL606__555905__1__REL606__1460157__1__3____36__36__1__1	max_left=32	max_left_minus=32	max_left_plus=28	max_min_left=13	max_min_left_minus=12	max_min_left_plus=13	max_min_right=16	max_min_right_minus=16	max_min_right_plus=16	max_right=32	max_right_minus=32	max_right_plus=31	min_overlap_score=497	pos_hash_score=34	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=58	total_reads=93
JC	177		REL606	561939	1	REL606	1837220	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__561939__1__REL606__1837219__1__1____36__36__0__0	max_left=19	max_left_minus=0	max_left_plus=19	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	84		REL606	584440	-1	REL606	3966804	-1	0	alignment_overlap=6	coverage_minus=0	coverage_plus=5	flanking_left=36	flanking_right=36	key=REL606__584440__0__REL606__3966810__0__6____36__36__0__0	max_left=8	max_left_minus=0	max_left_plus=8	max_min_left=8	max_min_left_minus=0	max_min_left_plus=8	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=29	max_right_minus=0	max_right_plus=29	min_overlap_score=18	pos_hash_score=4	reject=NJ	side_1_annotate_key=gene	side_1_overlap=6	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=5	total_reads=5
JC	2		REL606	588495	1	REL606	835450	-1	0	alignment_overlap=2	coverage_minus=21	coverage_plus=32	flanking_left=36	flanking_right=36	key=REL606__588495__1__REL606__835452__0__2____36__36__0__1	max_left=31	max_left_minus=30	max_left_plus=31	max_min_left=16	max_min_left_minus=16	max_min_left_plus=15	max_min_right=15	max_min_right_minus=15	max_min_right_plus=15	max_right=33	max_right_minus=30	max_right_plus=33	min_overlap_score=469	pos_hash_score=36	side_1_annotate_key=repeat	side_1_overlap=2	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=53	total_reads=99
JC	4		REL606	588495	1	REL606	3036433	-1	0	alignment_overlap=0	coverage_minus=52	coverage_plus=44	flanking_left=36	flanking_right=36	key=REL606__588495__1__REL606__3036433__0__0____36__36__0__1	max_left=35	max_left_minus=34	max_left_plus=35	max_min_left=17	max_min_left_minus=17	max_min_left_plus=17	max_min_right=18	max_min_right_minus=16	max_min_right_plus=18	max_right=35	max_right_minus=35	max_right_plus=35	min_overlap_score=909	pos_hash_score=56	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=96	total_reads=96
JC	11		REL606	588495	1	REL606	641158	1	0	alignment_overlap=2	coverage_minus=31	coverage_plus=36	flanking_left=36	flanking_right=36	key=REL606__588495__1__REL606__641156__1__2____36__36__0__1	max_left=29	max_left_minus=29	max_left_plus=29	max_min_left=15	max_min_left_minus=15	max_min_left_plus=13	max_min_right=17	max_min_right_minus=17	max_min_right_plus=17	max_right=33	max_right_minus=33	max_right_plus=33	min_overlap_score=622	pos_hash_score=36	side_1_annotate_key=repeat	side_1_overlap=2	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=67	total_reads=70
JC	147		REL606	588496	1	REL606	970690	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__588496__1__REL606__970690__0__0____36__36__1__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=20	max_right_minus=20	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	18		REL606	590471	-1	REL606	3036431	1	0	alignment_overlap=1	coverage_minus=27	coverage_plus=24	flanking_left=36	flanking_right=36	key=REL606__590472__0__REL606__3036431__1__1____36__36__1__0	max_left=34	max_left_minus=34	max_left_plus=34	max_min_left=17	max_min_left_minus=17	max_min_left_plus=17	max_min_right=16	max_min_right_minus=16	max_min_right_plus=16	max_right=34	max_right_minus=34	max_right_plus=34	min_overlap_score=455	pos_hash_score=42	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=51	total_reads=62
JC	19		REL606	590471	-1	REL606	3900624	1	0	alignment_overlap=1	coverage_minus=28	coverage_plus=32	flanking_left=36	flanking_right=36	key=REL606__590471__0__REL606__3900623__1__1____36__36__1__0	max_left=33	max_left_minus=33	max_left_plus=33	max_min_left=17	max_min_left_minus=17	max_min_left_plus=17	max_min_right=17	max_min_right_minus=17	max_min_right_plus=17	max_right=34	max_right_minus=33	max_right_plus=34	min_overlap_score=523	pos_hash_score=42	side_1_annotate_key=repeat	side_1_overlap=1	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=60	total_reads=61
JC	24		REL606	590471	-1	REL606	641161	-1	0	alignment_overlap=3	coverage_minus=15	coverage_plus=21	flanking_left=36	flanking_right=36	key=REL606__590473__0__REL606__641162__0__3____36__36__1__0	max_left=32	max_left_minus=32	max_left_plus=27	max_min_left=15	max_min_left_minus=15	max_min_left_plus=14	max_min_right=16	max_min_right_minus=11	max_min_right_plus=16	max_right=32	max_right_minus=32	max_right_plus=31	min_overlap_score=336	pos_hash_score=26	side_1_annotate_key=repeat	side_1_overlap=1	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=36	total_reads=50
JC	29		REL606	590471	-1	REL606	1462254	-1	0	alignment_overlap=1	coverage_minus=19	coverage_plus=24	flanking_left=36	flanking_right=36	key=REL606__590472__0__REL606__1462254__0__1____36__36__1__0	max_left=33	max_left_minus=32	max_left_plus=33	max_min_left=17	max_min_left_minus=16	max_min_left_plus=17	max_min_right=17	max_min_right_minus=16	max_min_right_plus=17	max_right=34	max_right_minus=30	max_right_plus=34	min_overlap_score=375	pos_hash_score=31	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=43	total_reads=44
JC	122		REL606	590635	-1	REL606	1644848	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__590635__0__REL606__1644848__1__0____36__36__0__0	max_left=18	max_left_minus=0	max_left_plus=18	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=18	max_min_right_minus=0	max_min_right_plus=18	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=18	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	8		REL606	592057	-1	REL606	2522612	1	0	alignment_overlap=5	coverage_minus=19	coverage_plus=36	flanking_left=36	flanking_right=36	key=REL606__592059__0__REL606__2522609__1__5____36__36__1__0	max_left=30	max_left_minus=30	max_left_plus=30	max_min_left=15	max_min_left_minus=15	max_min_left_plus=13	max_min_right=15	max_min_right_minus=11	max_min_right_plus=15	max_right=29	max_right_minus=28	max_right_plus=29	min_overlap_score=403	pos_hash_score=34	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=55	total_reads=80
JC	170		REL606	625514	1	REL606	1607194	-1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__625514__1__REL606__1607194__0__-1__C__36__36__0__1	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=0	max_right_plus=19	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=C
JC	90		REL606	628785	1	REL606	915320	1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=4	flanking_left=36	flanking_right=36	key=REL606__628785__1__REL606__915310__1__10____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=25	max_right_minus=0	max_right_plus=25	min_overlap_score=14	pos_hash_score=4	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=4	total_reads=4
JC	52		REL606	628787	1	REL606	4579611	-1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=11	flanking_left=36	flanking_right=36	key=REL606__628787__1__REL606__4579619__0__8____36__36__0__0	max_left=6	max_left_minus=0	max_left_plus=6	max_min_left=6	max_min_left_minus=0	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=27	max_right_minus=0	max_right_plus=27	min_overlap_score=42	pos_hash_score=8	reject=NJ	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=11	total_reads=11
JC	20		REL606	666130	-1	REL606	4252526	1	0	alignment_overlap=2	coverage_minus=16	coverage_plus=30	flanking_left=36	flanking_right=36	key=REL606__666132__0__REL606__4252526__1__2____36__36__1__0	max_left=33	max_left_minus=29	max_left_plus=33	max_min_left=16	max_min_left_minus=16	max_min_left_plus=16	max_min_right=17	max_min_right_minus=17	max_min_right_plus=17	max_right=33	max_right_minus=33	max_right_plus=31	min_overlap_score=485	pos_hash_score=29	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=46	total_reads=58
JC	65		REL606	676543	1	REL606	3710710	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=8	flanking_left=36	flanking_right=36	key=REL606__676543__1__REL606__3710709__1__1____36__36__0__0	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=17	max_min_left_minus=0	max_min_left_plus=17	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=33	max_right_minus=0	max_right_plus=33	min_overlap_score=38	pos_hash_score=5	reject=NJ	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=8	total_reads=8
JC	106		REL606	678444	1	REL606	2254525	-1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__678444__1__REL606__2254532__0__7____36__36__0__1	max_left=3	max_left_minus=3	max_left_plus=1	max_min_left=3	max_min_left_minus=3	max_min_left_plus=1	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=26	max_right_minus=26	max_right_plus=25	min_overlap_score=4	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=7	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=2	total_reads=2
JC	195		REL606	681564	1	REL606	3265737	-1	0	alignment_overlap=17	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__681564__1__REL606__3265754__0__17____36__36__0__1	max_left=5	max_left_minus=5	max_left_plus=0	max_min_left=5	max_min_left_minus=5	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=12	max_right_minus=12	max_right_plus=0	min_overlap_score=5	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=17	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	74		REL606	720004	1	REL606	3383700	1	0	alignment_overlap=4	coverage_minus=7	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__720004__1__REL606__3383696__1__4____36__36__0__0	max_left=31	max_left_minus=31	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=10	max_min_right_minus=10	max_min_right_plus=0	max_right=10	max_right_minus=10	max_right_plus=0	min_overlap_score=32	pos_hash_score=5	reject=NJ	side_1_annotate_key=gene	side_1_overlap=4	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=7	total_reads=7
JC	105		REL606	734927	-1	REL606	851518	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__734927__0__REL606__851518__0__-1__A__36__36__0__0	max_left=16	max_left_minus=9	max_left_plus=16	max_min_left=9	max_min_left_minus=9	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=18	max_right_minus=18	max_right_plus=16	min_overlap_score=25	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=A
JC	211		REL606	743720	-1	REL606	3638985	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__743720__0__REL606__3638985__1__0____36__36__0__0	max_left=10	max_left_minus=0	max_left_plus=10	max_min_left=10	max_min_left_minus=0	max_min_left_plus=10	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=26	max_right_minus=0	max_right_plus=26	min_overlap_score=10	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	121		REL606	761443	1	REL606	1678920	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__761443__1__REL606__1678920__1__0____36__36__1__0	max_left=20	max_left_minus=20	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	223		REL606	761876	-1	REL606	2450949	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__761876__0__REL606__2450948__1__1____36__36__1__1	max_left=32	max_left_minus=32	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=1	max_right_minus=1	max_right_plus=0	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=1	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	92		REL606	767246	1	REL606	1524727	-1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=13	flanking_left=36	flanking_right=36	key=REL606__767246__1__REL606__1524735__0__8____36__36__0__0	max_left=6	max_left_minus=0	max_left_plus=6	max_min_left=6	max_min_left_minus=0	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=27	max_right_minus=0	max_right_plus=27	min_overlap_score=38	pos_hash_score=9	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=13	total_reads=4
JC	174		REL606	772930	-1	REL606	3044333	-1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__772930__0__REL606__3044335__0__2____36__36__0__0	max_left=25	max_left_minus=25	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=3	max_min_right_minus=3	max_min_right_plus=0	max_right=3	max_right_minus=3	max_right_plus=0	min_overlap_score=3	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	57		REL606	774276	-1	REL606	2491441	1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=10	flanking_left=36	flanking_right=36	key=REL606__774276__0__REL606__2491431__1__10____36__36__0__0	max_left=6	max_left_minus=0	max_left_plus=6	max_min_left=6	max_min_left_minus=0	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=24	max_right_minus=0	max_right_plus=24	min_overlap_score=45	pos_hash_score=7	reject=NJ	side_1_annotate_key=gene	side_1_overlap=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=10	total_reads=10
JC	94		REL606	774282	-1	REL606	4303491	1	0	alignment_overlap=12	coverage_minus=1	coverage_plus=3	flanking_left=36	flanking_right=36	key=REL606__774282__0__REL606__4303479__1__12____36__36__0__1	max_left=20	max_left_minus=20	max_left_plus=9	max_min_left=9	max_min_left_minus=0	max_min_left_plus=9	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=17	max_right_minus=1	max_right_plus=17	min_overlap_score=24	pos_hash_score=3	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=12	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=4	total_reads=4
JC	107		REL606	809883	1	REL606	929353	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__809883__1__REL606__929343__1__10____36__36__0__0	max_left=19	max_left_minus=19	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=5	max_min_right_minus=5	max_min_right_plus=0	max_right=5	max_right_minus=5	max_right_plus=0	min_overlap_score=10	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	87		REL606	829367	1	REL606	1799494	1	0	alignment_overlap=12	coverage_minus=0	coverage_plus=5	flanking_left=36	flanking_right=36	key=REL606__829367__1__REL606__1799482__1__12____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=22	max_right_minus=0	max_right_plus=22	min_overlap_score=21	pos_hash_score=5	reject=NJ	side_1_annotate_key=gene	side_1_overlap=12	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=5	total_reads=5
JC	142		REL606	834782	-1	REL606	2541176	1	-4	alignment_overlap=-4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__834782__0__REL606__2541176__1__-4__GCTG__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GCTG
JC	27		REL606	835448	1	REL606	3894996	-1	0	alignment_overlap=3	coverage_minus=18	coverage_plus=19	flanking_left=36	flanking_right=36	key=REL606__835447__1__REL606__3894998__0__3____36__36__0__1	max_left=32	max_left_minus=32	max_left_plus=32	max_min_left=16	max_min_left_minus=8	max_min_left_plus=16	max_min_right=16	max_min_right_minus=16	max_min_right_plus=15	max_right=32	max_right_minus=32	max_right_plus=31	min_overlap_score=284	pos_hash_score=27	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=1	side_2_redundant=1	total_non_overlap_reads=37	total_reads=46
JC	165		REL606	855356	1	REL606	4607380	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__855356__1__REL606__4607380__0__0____36__36__0__1	max_left=14	max_left_minus=0	max_left_plus=14	max_min_left=14	max_min_left_minus=0	max_min_left_plus=14	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=22	max_right_minus=0	max_right_plus=22	min_overlap_score=14	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	214		REL606	855539	-1	REL606	4080793	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__855539__0__REL606__4080793__0__-1__G__36__36__0__0	max_left=19	max_left_minus=19	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	69		REL606	856821	1	REL606	2169877	-1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=8	flanking_left=36	flanking_right=36	key=REL606__856821__1__REL606__2169886__0__9____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=24	max_right_minus=0	max_right_plus=24	min_overlap_score=31	pos_hash_score=6	reject=NJ	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=8	total_reads=8
JC	186		REL606	858324	1	REL606	3162232	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__858324__1__REL606__3162229__1__3____36__36__0__1	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=11	max_min_right_minus=0	max_min_right_plus=11	max_right=11	max_right_minus=0	max_right_plus=11	min_overlap_score=11	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	150		REL606	934386	-1	REL606	2555613	-1	-5	alignment_overlap=-5	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__934386__0__REL606__2555613__0__-5__GCACT__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GCACT
JC	41		REL606	952745	1	REL606	1274450	1	0	alignment_overlap=11	coverage_minus=16	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__952745__1__REL606__1274439__1__11____36__36__0__0	max_left=24	max_left_minus=24	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=5	max_min_right_minus=5	max_min_right_plus=0	max_right=5	max_right_minus=5	max_right_plus=0	min_overlap_score=38	pos_hash_score=8	reject=NJ	side_1_annotate_key=gene	side_1_overlap=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=16	total_reads=16
JC	22		REL606	970687	1	REL606	3894996	-1	0	alignment_overlap=1	coverage_minus=25	coverage_plus=24	flanking_left=36	flanking_right=36	key=REL606__970687__1__REL606__3894997__0__1____36__36__0__1	max_left=34	max_left_minus=31	max_left_plus=34	max_min_left=17	max_min_left_minus=17	max_min_left_plus=17	max_min_right=17	max_min_right_minus=17	max_min_right_plus=17	max_right=34	max_right_minus=34	max_right_plus=33	min_overlap_score=456	pos_hash_score=34	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=49	total_reads=55
JC	15		REL606	970689	-1	REL606	3651091	1	0	alignment_overlap=3	coverage_minus=22	coverage_plus=31	flanking_left=36	flanking_right=36	key=REL606__970689__0__REL606__3651088__1__3____36__36__0__1	max_left=32	max_left_minus=31	max_left_plus=32	max_min_left=16	max_min_left_minus=13	max_min_left_plus=16	max_min_right=16	max_min_right_minus=15	max_min_right_plus=16	max_right=32	max_right_minus=32	max_right_plus=32	min_overlap_score=435	pos_hash_score=36	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=53	total_reads=65
JC	208		REL606	981562	1	REL606	1874213	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__981562__1__REL606__1874213__0__-4__CTTC__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CTTC
JC	203		REL606	987305	1	REL606	3168513	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__987305__1__REL606__3168513__0__-4__AGTA__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=AGTA
JC	206		REL606	994855	-1	REL606	2019366	-1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__994855__0__REL606__2019366__0__-2__TA__36__36__0__0	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=17	max_min_right_minus=0	max_min_right_plus=17	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TA
JC	93		REL606	995888	-1	REL606	2829419	-1	0	alignment_overlap=11	coverage_minus=4	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__995888__0__REL606__2829430__0__11____36__36__0__0	max_left=23	max_left_minus=23	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=7	max_min_right_minus=7	max_min_right_plus=0	max_right=7	max_right_minus=7	max_right_plus=0	min_overlap_score=19	pos_hash_score=4	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=4	total_reads=4
JC	193		REL606	1015658	1	REL606	3237940	-1	0	alignment_overlap=4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1015658__1__REL606__3237944__0__4____36__36__0__0	max_left=13	max_left_minus=0	max_left_plus=13	max_min_left=13	max_min_left_minus=0	max_min_left_plus=13	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=0	max_right_plus=19	min_overlap_score=13	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=4	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	207		REL606	1050456	1	REL606	1052543	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1050456__1__REL606__1052543__0__0____36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=20	max_right_minus=0	max_right_plus=20	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	49		REL606	1073387	1	REL606	3245476	1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=12	flanking_left=36	flanking_right=36	key=REL606__1073387__1__REL606__3245468__1__8____36__36__0__0	max_left=6	max_left_minus=0	max_left_plus=6	max_min_left=6	max_min_left_minus=0	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=27	max_right_minus=0	max_right_plus=27	min_overlap_score=46	pos_hash_score=7	reject=NJ	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=12	total_reads=12
JC	167		REL606	1084667	1	REL606	1933267	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1084667__1__REL606__1933267__1__0____36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=20	max_right_minus=20	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	166		REL606	1101055	1	REL606	4304652	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1101055__1__REL606__4304652__0__0____36__36__0__0	max_left=12	max_left_minus=12	max_left_plus=0	max_min_left=12	max_min_left_minus=12	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=24	max_right_minus=24	max_right_plus=0	min_overlap_score=12	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	31		REL606	1101970	1	REL606	3893554	1	0	alignment_overlap=1	coverage_minus=22	coverage_plus=17	flanking_left=36	flanking_right=36	key=REL606__1101970__1__REL606__3893553__1__1____36__36__0__0	max_left=34	max_left_minus=34	max_left_plus=33	max_min_left=17	max_min_left_minus=16	max_min_left_plus=17	max_min_right=17	max_min_right_minus=17	max_min_right_plus=14	max_right=33	max_right_minus=33	max_right_plus=32	min_overlap_score=346	pos_hash_score=28	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=39	total_reads=40
JC	30		REL606	1101972	-1	REL606	3894996	-1	0	alignment_overlap=1	coverage_minus=22	coverage_plus=19	flanking_left=36	flanking_right=36	key=REL606__1101972__0__REL606__3894997__0__1____36__36__0__1	max_left=34	max_left_minus=34	max_left_plus=34	max_min_left=17	max_min_left_minus=16	max_min_left_plus=17	max_min_right=17	max_min_right_minus=17	max_min_right_plus=11	max_right=33	max_right_minus=33	max_right_plus=32	min_overlap_score=395	pos_hash_score=30	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=41	total_reads=44
JC	114		REL606	1106522	-1	REL606	2754878	1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__1106522__0__REL606__2754869__1__9____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=12	max_min_right_minus=0	max_min_right_plus=12	max_right=12	max_right_minus=0	max_right_plus=12	min_overlap_score=24	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	185		REL606	1120914	-1	REL606	1120960	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1120914__0__REL606__1120960__1__0____36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=18	max_min_right_minus=18	max_min_right_plus=0	max_right=18	max_right_minus=18	max_right_plus=0	min_overlap_score=18	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	78		REL606	1122285	-1	REL606	3725720	1	0	alignment_overlap=11	coverage_minus=0	coverage_plus=6	flanking_left=36	flanking_right=36	key=REL606__1122285__0__REL606__3725709__1__11____36__36__0__0	max_left=8	max_left_minus=0	max_left_plus=8	max_min_left=8	max_min_left_minus=0	max_min_left_plus=8	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=24	max_right_minus=0	max_right_plus=24	min_overlap_score=33	pos_hash_score=5	reject=NJ	side_1_annotate_key=gene	side_1_overlap=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=6	total_reads=6
JC	110		REL606	1126473	-1	REL606	3083358	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1126473__0__REL606__3083358__0__0____36__36__0__0	max_left=19	max_left_minus=19	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=13	max_min_right_minus=13	max_min_right_plus=0	max_right=13	max_right_minus=13	max_right_plus=0	min_overlap_score=26	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	43		REL606	1139194	-1	REL606	4317947	1	0	alignment_overlap=14	coverage_minus=0	coverage_plus=18	flanking_left=36	flanking_right=36	key=REL606__1139194__0__REL606__4317933__1__14____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=21	max_right_minus=0	max_right_plus=21	min_overlap_score=26	pos_hash_score=8	reject=NJ	side_1_annotate_key=gene	side_1_overlap=14	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=18	total_reads=16
JC	103		REL606	1142691	1	REL606	4626115	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1142691__1__REL606__4626115__0__-1__A__36__36__0__0	max_left=34	max_left_minus=34	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=18	max_right_minus=1	max_right_plus=18	min_overlap_score=17	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=A
JC	149		REL606	1143760	-1	REL606	3685099	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1143760__0__REL606__3685099__0__-4__ACCG__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=ACCG
JC	38		REL606	1154778	1	REL606	4385254	-1	0	alignment_overlap=7	coverage_minus=19	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1154778__1__REL606__4385261__0__7____36__36__0__0	max_left=28	max_left_minus=28	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=9	max_min_right_minus=9	max_min_right_plus=0	max_right=9	max_right_minus=9	max_right_plus=0	min_overlap_score=97	pos_hash_score=11	reject=NJ	side_1_annotate_key=gene	side_1_overlap=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=19	total_reads=19
JC	124		REL606	1160554	-1	REL606	2489083	1	-5	alignment_overlap=-5	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1160554__0__REL606__2489083__1__-5__CATCC__36__36__0__1	max_left=0	max_left_minus=0	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=35	max_right_minus=0	max_right_plus=35	min_overlap_score=-4	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CATCC
JC	133		REL606	1180340	-1	REL606	1180349	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1180340__0__REL606__1180349__1__0____36__36__0__0	max_left=31	max_left_minus=31	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=3	max_min_right_minus=3	max_min_right_plus=0	max_right=3	max_right_minus=3	max_right_plus=0	min_overlap_score=3	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	116		REL606	1188591	-1	REL606	1188609	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1188591__0__REL606__1188609__0__0____36__36__0__0	max_left=32	max_left_minus=32	max_left_plus=18	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=18	max_min_right_minus=1	max_min_right_plus=18	max_right=18	max_right_minus=1	max_right_plus=18	min_overlap_score=19	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	55		REL606	1213992	1	REL606	3880881	1	0	alignment_overlap=11	coverage_minus=0	coverage_plus=10	flanking_left=36	flanking_right=36	key=REL606__1213992__1__REL606__3880870__1__11____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=23	max_right_minus=0	max_right_plus=23	min_overlap_score=32	pos_hash_score=6	reject=NJ	side_1_annotate_key=gene	side_1_overlap=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=10	total_reads=10
JC	95		REL606	1242962	1	REL606	3622972	1	-3	alignment_overlap=-3	coverage_minus=2	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1242962__1__REL606__3622972__1__-3__AAT__36__36__0__0	max_left=33	max_left_minus=33	max_left_plus=30	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=2	max_min_right_minus=0	max_min_right_plus=2	max_right=2	max_right_minus=0	max_right_plus=2	min_overlap_score=1	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3	unique_read_sequence=AAT
JC	181		REL606	1275820	-1	REL606	1605999	-1	-2	alignment_overlap=-2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1275820__0__REL606__1605999__0__-2__CG__36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CG
JC	113		REL606	1286104	1	REL606	1738046	-1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1286104__1__REL606__1738047__0__1____36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=20	max_right_minus=20	max_right_plus=0	min_overlap_score=31	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	158		REL606	1342944	1	REL606	2513809	1	0	alignment_overlap=4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1342944__1__REL606__2513805__1__4____36__36__0__1	max_left=9	max_left_minus=9	max_left_plus=0	max_min_left=9	max_min_left_minus=9	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=9	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=4	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	125		REL606	1342963	-1	REL606	4603876	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1342963__0__REL606__4603876__0__0____36__36__0__1	max_left=3	max_left_minus=3	max_left_plus=0	max_min_left=3	max_min_left_minus=3	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=25	max_right_minus=25	max_right_plus=0	min_overlap_score=3	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	188		REL606	1361782	-1	REL606	3542786	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1361782__0__REL606__3542786__1__0____36__36__0__0	max_left=18	max_left_minus=0	max_left_plus=18	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=18	max_min_right_minus=0	max_min_right_plus=18	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=18	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	184		REL606	1364786	-1	REL606	4285097	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1364786__0__REL606__4285097__1__0____36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	68		REL606	1412990	-1	REL606	4481700	-1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=8	flanking_left=36	flanking_right=36	key=REL606__1412990__0__REL606__4481708__0__8____36__36__0__0	max_left=6	max_left_minus=0	max_left_plus=6	max_min_left=6	max_min_left_minus=0	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=27	max_right_minus=0	max_right_plus=27	min_overlap_score=26	pos_hash_score=6	reject=NJ	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=8	total_reads=8
JC	81		REL606	1444279	-1	REL606	3189816	-1	0	alignment_overlap=10	coverage_minus=6	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1444279__0__REL606__3189826__0__10____36__36__0__0	max_left=21	max_left_minus=21	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=5	max_min_right_minus=5	max_min_right_plus=0	max_right=5	max_right_minus=5	max_right_plus=0	min_overlap_score=20	pos_hash_score=4	reject=NJ	side_1_annotate_key=gene	side_1_overlap=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=6	total_reads=6
JC	132		REL606	1460158	1	REL606	1604687	-1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1460158__1__REL606__1604687__0__-1__T__36__36__0__1	max_left=18	max_left_minus=0	max_left_plus=18	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=17	max_min_right_minus=0	max_min_right_plus=17	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=T
JC	17		REL606	1460160	1	REL606	1803267	1	0	alignment_overlap=2	coverage_minus=32	coverage_plus=29	flanking_left=36	flanking_right=36	key=REL606__1460158__1__REL606__1803267__1__2____36__36__1__0	max_left=33	max_left_minus=33	max_left_plus=33	max_min_left=16	max_min_left_minus=16	max_min_left_plus=16	max_min_right=16	max_min_right_minus=13	max_min_right_plus=16	max_right=33	max_right_minus=33	max_right_plus=31	min_overlap_score=498	pos_hash_score=34	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=61	total_reads=63
JC	21		REL606	1462251	1	REL606	3893554	1	0	alignment_overlap=2	coverage_minus=27	coverage_plus=21	flanking_left=36	flanking_right=36	key=REL606__1462251__1__REL606__3893552__1__2____36__36__0__1	max_left=32	max_left_minus=32	max_left_plus=32	max_min_left=16	max_min_left_minus=16	max_min_left_plus=14	max_min_right=17	max_min_right_minus=15	max_min_right_plus=17	max_right=33	max_right_minus=33	max_right_plus=33	min_overlap_score=431	pos_hash_score=32	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=48	total_reads=58
JC	50		REL606	1464753	-1	REL606	4083175	-1	0	alignment_overlap=6	coverage_minus=0	coverage_plus=12	flanking_left=36	flanking_right=36	key=REL606__1464753__0__REL606__4083181__0__6____36__36__0__0	max_left=9	max_left_minus=0	max_left_plus=9	max_min_left=9	max_min_left_minus=0	max_min_left_plus=9	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=29	max_right_minus=0	max_right_plus=29	min_overlap_score=61	pos_hash_score=7	reject=NJ	side_1_annotate_key=gene	side_1_overlap=6	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=12	total_reads=12
JC	86		REL606	1476159	-1	REL606	3571657	-1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=5	flanking_left=36	flanking_right=36	key=REL606__1476159__0__REL606__3571666__0__9____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=20	max_right_minus=0	max_right_plus=20	min_overlap_score=25	pos_hash_score=4	reject=NJ	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=5	total_reads=5
JC	98		REL606	1483136	-1	REL606	1968159	-1	0	alignment_overlap=7	coverage_minus=0	coverage_plus=3	flanking_left=36	flanking_right=36	key=REL606__1483136__0__REL606__1968166__0__7____36__36__0__0	max_left=8	max_left_minus=0	max_left_plus=8	max_min_left=8	max_min_left_minus=0	max_min_left_plus=8	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=24	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3
JC	46		REL606	1486890	1	REL606	3677558	1	0	alignment_overlap=9	coverage_minus=14	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1486890__1__REL606__3677549__1__9____36__36__0__0	max_left=25	max_left_minus=25	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=5	max_min_right_minus=5	max_min_right_plus=0	max_right=5	max_right_minus=5	max_right_plus=0	min_overlap_score=35	pos_hash_score=9	reject=NJ	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=14	total_reads=14
JC	64		REL606	1495815	1	REL606	4038529	1	0	alignment_overlap=6	coverage_minus=8	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1495815__1__REL606__4038523__1__6____36__36__0__0	max_left=28	max_left_minus=28	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=10	max_min_right_minus=10	max_min_right_plus=0	max_right=10	max_right_minus=10	max_right_plus=0	min_overlap_score=43	pos_hash_score=5	reject=NJ	side_1_annotate_key=gene	side_1_overlap=6	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=8	total_reads=8
JC	61		REL606	1509925	1	REL606	4202114	1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=9	flanking_left=36	flanking_right=36	key=REL606__1509925__1__REL606__4202105__1__9____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=25	max_right_minus=0	max_right_plus=25	min_overlap_score=32	pos_hash_score=6	reject=NJ	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=9	total_reads=9
JC	80		REL606	1524735	-1	REL606	4627153	1	0	alignment_overlap=6	coverage_minus=15	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1524735__0__REL606__4627147__1__6____36__36__0__0	max_left=29	max_left_minus=29	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=9	max_min_right_minus=9	max_min_right_plus=0	max_right=9	max_right_minus=9	max_right_plus=0	min_overlap_score=57	pos_hash_score=10	reject=NJ	side_1_annotate_key=gene	side_1_overlap=6	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=15	total_reads=6
JC	144		REL606	1533193	-1	REL606	2055892	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1533193__0__REL606__2055892__1__0____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=21	max_right_minus=0	max_right_plus=21	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	60		REL606	1580990	1	REL606	4457963	1	0	alignment_overlap=8	coverage_minus=9	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1580990__1__REL606__4457955__1__8____36__36__0__0	max_left=24	max_left_minus=24	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=8	max_min_right_minus=8	max_min_right_plus=0	max_right=8	max_right_minus=8	max_right_plus=0	min_overlap_score=47	pos_hash_score=7	reject=NJ	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=9	total_reads=9
JC	202		REL606	1658715	1	REL606	2202849	1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1658715__1__REL606__2202847__1__2____36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	70		REL606	1742071	-1	REL606	4143725	-1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=7	flanking_left=36	flanking_right=36	key=REL606__1742071__0__REL606__4143735__0__10____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=25	max_right_minus=0	max_right_plus=25	min_overlap_score=16	pos_hash_score=5	reject=NJ	side_1_annotate_key=gene	side_1_overlap=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=7	total_reads=7
JC	152		REL606	1749475	-1	REL606	3276969	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1749474__0__REL606__3276969__1__1____36__36__1__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=19	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	194		REL606	1751208	1	REL606	3080174	1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1751208__1__REL606__3080171__1__3____36__36__0__1	max_left=1	max_left_minus=1	max_left_plus=0	max_min_left=1	max_min_left_minus=1	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=31	max_right_minus=31	max_right_plus=0	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	111		REL606	1762759	1	REL606	2199786	-1	-7	alignment_overlap=-7	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__1762759__1__REL606__2199786__0__-7__TGTGATG__36__36__0__0	max_left=14	max_left_minus=0	max_left_plus=14	max_min_left=14	max_min_left_minus=0	max_min_left_plus=14	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=28	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=TGTGATG
JC	156		REL606	1790653	-1	REL606	3365961	-1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1790653__0__REL606__3365962__0__1____36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=17	max_min_right_minus=17	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	143		REL606	1797624	1	REL606	2605085	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1797624__1__REL606__2605085__0__-1__T__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=T
JC	182		REL606	1845882	1	REL606	3717438	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1845882__1__REL606__3717438__1__0____36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=18	max_min_right_minus=18	max_min_right_plus=0	max_right=18	max_right_minus=18	max_right_plus=0	min_overlap_score=18	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	153		REL606	1879264	-1	REL606	2324109	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1879264__0__REL606__2324109__1__0____36__36__0__0	max_left=20	max_left_minus=20	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	115		REL606	1922794	1	REL606	1922987	-1	0	alignment_overlap=11	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__1922794__1__REL606__1922998__0__11____36__36__0__0	max_left=12	max_left_minus=0	max_left_plus=12	max_min_left=12	max_min_left_minus=0	max_min_left_plus=12	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=20	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	201		REL606	1922807	1	REL606	1922903	-1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1922807__1__REL606__1922910__0__7____36__36__0__0	max_left=28	max_left_minus=28	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=1	max_right_minus=1	max_right_plus=0	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	89		REL606	1951559	-1	REL606	4091235	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=4	flanking_left=36	flanking_right=36	key=REL606__1951559__0__REL606__4091235__1__0____36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=59	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=4	total_reads=4
JC	221		REL606	2001017	-1	REL606	2140309	1	-3	alignment_overlap=-3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2001017__0__REL606__2140309__1__-3__ACT__36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=ACT
JC	91		REL606	2012799	1	REL606	3580081	1	0	alignment_overlap=11	coverage_minus=0	coverage_plus=4	flanking_left=36	flanking_right=36	key=REL606__2012799__1__REL606__3580070__1__11____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=22	max_right_minus=0	max_right_plus=22	min_overlap_score=18	pos_hash_score=4	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=4	total_reads=4
JC	226		REL606	2085829	-1	REL606	2086163	1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2085829__0__REL606__2086155__1__8____36__36__0__0	max_left=1	max_left_minus=0	max_left_plus=1	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=27	max_right_minus=0	max_right_plus=27	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	53		REL606	2151364	1	REL606	2607291	-1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=11	flanking_left=36	flanking_right=36	key=REL606__2151364__1__REL606__2607299__0__8____36__36__0__0	max_left=6	max_left_minus=0	max_left_plus=6	max_min_left=6	max_min_left_minus=0	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=27	max_right_minus=0	max_right_plus=27	min_overlap_score=40	pos_hash_score=7	reject=NJ	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=11	total_reads=11
JC	169		REL606	2159769	1	REL606	2506440	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2159769__1__REL606__2506440__0__-4__TGAA__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TGAA
JC	197		REL606	2187772	1	REL606	2583280	-1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2187772__1__REL606__2583281__0__1____36__36__0__0	max_left=27	max_left_minus=27	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=4	max_min_right_minus=4	max_min_right_plus=0	max_right=4	max_right_minus=4	max_right_plus=0	min_overlap_score=4	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	141		REL606	2187805	-1	REL606	4603894	-1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2187805__0__REL606__4603902__0__8____36__36__0__0	max_left=26	max_left_minus=0	max_left_plus=26	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=2	max_min_right_minus=0	max_min_right_plus=2	max_right=2	max_right_minus=0	max_right_plus=2	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	88		REL606	2211648	-1	REL606	4076212	-1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=5	flanking_left=36	flanking_right=36	key=REL606__2211648__0__REL606__4076221__0__9____36__36__0__0	max_left=7	max_left_minus=0	max_left_plus=7	max_min_left=7	max_min_left_minus=0	max_min_left_plus=7	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=26	max_right_minus=0	max_right_plus=26	min_overlap_score=22	pos_hash_score=5	reject=NJ	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=5	total_reads=5
JC	145		REL606	2227081	1	REL606	2227143	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2227081__1__REL606__2227143__0__0____36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=20	max_right_minus=0	max_right_plus=20	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	192		REL606	2235790	-1	REL606	2783883	1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2235790__0__REL606__2783883__1__-2__CT__36__36__0__0	max_left=2	max_left_minus=0	max_left_plus=2	max_min_left=2	max_min_left_minus=0	max_min_left_plus=2	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=28	max_right_minus=0	max_right_plus=28	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CT
JC	212		REL606	2254379	1	REL606	2255138	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2254379__1__REL606__2255138__1__0____36__36__0__1	max_left=33	max_left_minus=33	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=1	max_right_minus=1	max_right_plus=0	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	179		REL606	2254452	1	REL606	3164169	1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2254452__1__REL606__3164167__1__2____36__36__1__1	max_left=33	max_left_minus=33	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=1	max_right_minus=1	max_right_plus=0	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=2	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	210		REL606	2263684	-1	REL606	2488864	1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2263684__0__REL606__2488864__1__-1__C__36__36__0__1	max_left=33	max_left_minus=0	max_left_plus=33	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=0	max_right_minus=0	max_right_plus=0	min_overlap_score=0	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=C
JC	176		REL606	2263692	1	REL606	3041378	1	0	alignment_overlap=4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2263696__1__REL606__3041378__1__4____36__36__1__0	max_left=27	max_left_minus=27	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=2	max_min_right_minus=2	max_min_right_plus=0	max_right=2	max_right_minus=2	max_right_plus=0	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=4	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	44		REL606	2273134	1	REL606	3439421	1	0	alignment_overlap=12	coverage_minus=0	coverage_plus=16	flanking_left=36	flanking_right=36	key=REL606__2273134__1__REL606__3439409__1__12____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=23	max_right_minus=0	max_right_plus=23	min_overlap_score=58	pos_hash_score=9	reject=NJ	side_1_annotate_key=gene	side_1_overlap=12	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=16	total_reads=16
JC	9		REL606	2283472	1	REL606	3651091	1	0	alignment_overlap=1	coverage_minus=36	coverage_plus=33	flanking_left=36	flanking_right=36	key=REL606__2283472__1__REL606__3651090__1__1____36__36__0__1	max_left=34	max_left_minus=34	max_left_plus=34	max_min_left=17	max_min_left_minus=17	max_min_left_plus=17	max_min_right=16	max_min_right_minus=16	max_min_right_plus=16	max_right=34	max_right_minus=34	max_right_plus=34	min_overlap_score=454	pos_hash_score=40	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=69	total_reads=72
JC	28		REL606	2283474	-1	REL606	3652533	-1	0	alignment_overlap=4	coverage_minus=26	coverage_plus=16	flanking_left=36	flanking_right=36	key=REL606__2283476__0__REL606__3652535__0__4____36__36__0__0	max_left=31	max_left_minus=29	max_left_plus=31	max_min_left=15	max_min_left_minus=15	max_min_left_plus=10	max_min_right=15	max_min_right_minus=15	max_min_right_plus=15	max_right=31	max_right_minus=31	max_right_plus=31	min_overlap_score=357	pos_hash_score=31	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=2	side_2_redundant=1	total_non_overlap_reads=42	total_reads=45
JC	216		REL606	2287004	-1	REL606	2287008	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2287004__0__REL606__2287008__1__0____36__36__0__0	max_left=20	max_left_minus=20	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	71		REL606	2288405	1	REL606	4574845	1	0	alignment_overlap=10	coverage_minus=7	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2288405__1__REL606__4574835__1__10____36__36__0__0	max_left=25	max_left_minus=25	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=5	max_min_right_minus=5	max_min_right_plus=0	max_right=5	max_right_minus=5	max_right_plus=0	min_overlap_score=27	pos_hash_score=4	reject=NJ	side_1_annotate_key=gene	side_1_overlap=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=7	total_reads=7
JC	178		REL606	2294039	1	REL606	3150231	1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2294039__1__REL606__3150221__1__10____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=21	max_right_minus=0	max_right_plus=21	min_overlap_score=5	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	47		REL606	2338216	-1	REL606	4060789	1	0	alignment_overlap=7	coverage_minus=0	coverage_plus=13	flanking_left=36	flanking_right=36	key=REL606__2338216__0__REL606__4060782__1__7____36__36__0__0	max_left=7	max_left_minus=0	max_left_plus=7	max_min_left=7	max_min_left_minus=0	max_min_left_plus=7	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=28	max_right_minus=0	max_right_plus=28	min_overlap_score=47	pos_hash_score=7	reject=NJ	side_1_annotate_key=gene	side_1_overlap=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=13	total_reads=13
JC	168		REL606	2359839	-1	REL606	3380869	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2359839__0__REL606__3380868__1__1____36__36__0__0	max_left=19	max_left_minus=19	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	136		REL606	2387424	1	REL606	4274805	1	0	alignment_overlap=19	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2387424__1__REL606__4274786__1__19____36__36__0__1	max_left=1	max_left_minus=0	max_left_plus=1	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=19	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	154		REL606	2414685	1	REL606	4328234	-1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2414685__1__REL606__4328236__0__2____36__36__0__0	max_left=13	max_left_minus=13	max_left_plus=0	max_min_left=13	max_min_left_minus=13	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=13	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	146		REL606	2495300	-1	REL606	2815862	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2495300__0__REL606__2815862__0__-4__GCCG__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GCCG
JC	54		REL606	2540066	-1	REL606	4324591	1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=11	flanking_left=36	flanking_right=36	key=REL606__2540066__0__REL606__4324582__1__9____36__36__0__0	max_left=7	max_left_minus=0	max_left_plus=7	max_min_left=7	max_min_left_minus=0	max_min_left_plus=7	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=26	max_right_minus=0	max_right_plus=26	min_overlap_score=40	pos_hash_score=8	reject=NJ	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=11	total_reads=11
JC	101		REL606	2583281	-1	REL606	3164170	1	0	alignment_overlap=3	coverage_minus=32	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2583281__0__REL606__3164167__1__3____36__36__1__1	max_left=32	max_left_minus=32	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=157	pos_hash_score=15	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=32	total_reads=2
JC	175		REL606	2583282	-1	REL606	4467641	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2583282__0__REL606__4467641__0__0____36__36__0__1	max_left=2	max_left_minus=2	max_left_plus=0	max_min_left=2	max_min_left_minus=2	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=34	max_right_minus=34	max_right_plus=0	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	190		REL606	2603381	-1	REL606	2603382	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2603381__0__REL606__2603382__0__0____36__36__0__0	max_left=20	max_left_minus=20	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	204		REL606	2658235	1	REL606	3261396	-1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2658235__1__REL606__3261396__0__-1__T__36__36__0__0	max_left=0	max_left_minus=0	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=35	max_right_minus=0	max_right_plus=35	min_overlap_score=0	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=T
JC	198		REL606	2697015	1	REL606	4098145	-1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2697015__1__REL606__4098145__0__-3__GTT__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GTT
JC	200		REL606	2702987	1	REL606	3084913	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2702987__1__REL606__3084912__1__1____36__36__0__0	max_left=3	max_left_minus=0	max_left_plus=3	max_min_left=3	max_min_left_minus=0	max_min_left_plus=3	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=32	max_right_minus=0	max_right_plus=32	min_overlap_score=3	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	161		REL606	2714703	1	REL606	4005163	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2714703__1__REL606__4005163__0__-1__G__36__36__0__0	max_left=7	max_left_minus=7	max_left_plus=0	max_min_left=7	max_min_left_minus=7	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=26	max_right_minus=26	max_right_plus=0	min_overlap_score=7	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	126		REL606	2748629	-1	REL606	2974103	1	-6	alignment_overlap=-6	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2748629__0__REL606__2974103__1__-6__TGAAGG__36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TGAAGG
JC	79		REL606	2868900	-1	REL606	2979971	-1	0	alignment_overlap=8	coverage_minus=6	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2868900__0__REL606__2979979__0__8____36__36__0__0	max_left=27	max_left_minus=27	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=6	max_min_right_minus=6	max_min_right_plus=0	max_right=6	max_right_minus=6	max_right_plus=0	min_overlap_score=28	pos_hash_score=6	reject=NJ	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=6	total_reads=6
JC	127		REL606	2882115	-1	REL606	3363342	1	-4	alignment_overlap=-4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2882115__0__REL606__3363342__1__-4__CGCG__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CGCG
JC	73		REL606	2889225	1	REL606	4002196	-1	0	alignment_overlap=7	coverage_minus=0	coverage_plus=7	flanking_left=36	flanking_right=36	key=REL606__2889225__1__REL606__4002203__0__7____36__36__0__0	max_left=8	max_left_minus=0	max_left_plus=8	max_min_left=8	max_min_left_minus=0	max_min_left_plus=8	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=27	max_right_minus=0	max_right_plus=27	min_overlap_score=43	pos_hash_score=6	reject=NJ	side_1_annotate_key=gene	side_1_overlap=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=7	total_reads=7
JC	157		REL606	2900576	1	REL606	3945418	-1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2900576__1__REL606__3945418__0__-1__T__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=0	max_right_plus=19	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=T
JC	72		REL606	3008331	1	REL606	4313465	1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=7	flanking_left=36	flanking_right=36	key=REL606__3008331__1__REL606__4313455__1__10____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=24	max_right_minus=0	max_right_plus=24	min_overlap_score=27	pos_hash_score=5	reject=NJ	side_1_annotate_key=gene	side_1_overlap=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=7	total_reads=7
JC	140		REL606	3032841	1	REL606	4411984	1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3032841__1__REL606__4411982__1__2____36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	191		REL606	3063656	1	REL606	4153269	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__3063656__1__REL606__4153268__1__1____36__36__0__0	max_left=1	max_left_minus=0	max_left_plus=1	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=33	max_right_minus=0	max_right_plus=33	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	187		REL606	3073744	-1	REL606	4005789	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3073744__0__REL606__4005789__1__0____36__36__1__0	max_left=31	max_left_minus=31	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=3	max_min_right_minus=3	max_min_right_plus=0	max_right=3	max_right_minus=3	max_right_plus=0	min_overlap_score=3	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	42		REL606	3160994	-1	REL606	3686233	-1	0	alignment_overlap=9	coverage_minus=16	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3160994__0__REL606__3686242__0__9____36__36__0__0	max_left=26	max_left_minus=26	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=6	max_min_right_minus=6	max_min_right_plus=0	max_right=6	max_right_minus=6	max_right_plus=0	min_overlap_score=51	pos_hash_score=9	reject=NJ	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=16	total_reads=16
JC	135		REL606	3172477	-1	REL606	3227386	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3172477__0__REL606__3227386__1__0____36__36__0__0	max_left=19	max_left_minus=19	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=17	max_min_right_minus=17	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	51		REL606	3192244	-1	REL606	4131465	1	0	alignment_overlap=7	coverage_minus=0	coverage_plus=11	flanking_left=36	flanking_right=36	key=REL606__3192244__0__REL606__4131458__1__7____36__36__0__0	max_left=8	max_left_minus=0	max_left_plus=8	max_min_left=8	max_min_left_minus=0	max_min_left_plus=8	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=28	max_right_minus=0	max_right_plus=28	min_overlap_score=48	pos_hash_score=9	reject=NJ	side_1_annotate_key=gene	side_1_overlap=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=11	total_reads=11
JC	75		REL606	3203007	-1	REL606	4265056	1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=7	flanking_left=36	flanking_right=36	key=REL606__3203007__0__REL606__4265046__1__10____36__36__0__0	max_left=7	max_left_minus=0	max_left_plus=7	max_min_left=7	max_min_left_minus=0	max_min_left_plus=7	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=25	max_right_minus=0	max_right_plus=25	min_overlap_score=30	pos_hash_score=5	reject=NJ	side_1_annotate_key=gene	side_1_overlap=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=7	total_reads=7
JC	99		REL606	3203380	-1	REL606	3317957	-1	0	alignment_overlap=8	coverage_minus=3	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3203380__0__REL606__3317965__0__8____36__36__0__0	max_left=21	max_left_minus=21	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=6	max_min_right_minus=6	max_min_right_plus=0	max_right=6	max_right_minus=6	max_right_plus=0	min_overlap_score=14	pos_hash_score=3	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3
JC	172		REL606	3206342	1	REL606	4330745	-1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__3206342__1__REL606__4330745__0__-2__TG__36__36__0__0	max_left=18	max_left_minus=0	max_left_plus=18	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TG
JC	225		REL606	3278100	-1	REL606	3278101	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3278100__0__REL606__3278101__0__0____36__36__0__0	max_left=20	max_left_minus=20	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	180		REL606	3336737	-1	REL606	3438585	-1	-4	alignment_overlap=-4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3336737__0__REL606__3438585__0__-4__AACA__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=AACA
JC	128		REL606	3343350	1	REL606	3343351	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3343350__1__REL606__3343351__1__0____36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=20	max_right_minus=20	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	148		REL606	3378366	-1	REL606	4136639	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3378366__0__REL606__4136639__0__0____36__36__0__0	max_left=20	max_left_minus=20	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	39		REL606	3500637	1	REL606	4567079	-1	0	alignment_overlap=9	coverage_minus=9	coverage_plus=9	flanking_left=36	flanking_right=36	key=REL606__3500637__1__REL606__4567088__0__9____36__36__0__0	max_left=26	max_left_minus=26	max_left_plus=5	max_min_left=5	max_min_left_minus=5	max_min_left_plus=5	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=26	max_right_minus=23	max_right_plus=26	min_overlap_score=61	pos_hash_score=11	reject=NJ	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=18	total_reads=18
JC	40		REL606	3541489	-1	REL606	3561250	1	0	alignment_overlap=11	coverage_minus=0	coverage_plus=18	flanking_left=36	flanking_right=36	key=REL606__3541489__0__REL606__3561239__1__11____36__36__0__0	max_left=13	max_left_minus=0	max_left_plus=13	max_min_left=3	max_min_left_minus=0	max_min_left_plus=3	max_min_right=10	max_min_right_minus=0	max_min_right_plus=10	max_right=24	max_right_minus=0	max_right_plus=24	min_overlap_score=64	pos_hash_score=11	reject=NJ	side_1_annotate_key=gene	side_1_overlap=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=18	total_reads=18
JC	219		REL606	3586583	-1	REL606	4416695	-1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3586583__0__REL606__4416696__0__1____36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=19	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	6		REL606	3651091	1	REL606	4252528	-1	0	alignment_overlap=4	coverage_minus=39	coverage_plus=22	flanking_left=36	flanking_right=36	key=REL606__3651089__1__REL606__4252530__0__4____36__36__1__0	max_left=31	max_left_minus=31	max_left_plus=31	max_min_left=15	max_min_left_minus=15	max_min_left_plus=15	max_min_right=16	max_min_right_minus=15	max_min_right_plus=16	max_right=31	max_right_minus=31	max_right_plus=29	min_overlap_score=530	pos_hash_score=36	side_1_annotate_key=repeat	side_1_overlap=2	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=61	total_reads=91
JC	14		REL606	3652533	-1	REL606	4567086	1	0	alignment_overlap=2	coverage_minus=32	coverage_plus=27	flanking_left=36	flanking_right=36	key=REL606__3652535__0__REL606__4567086__1__2____36__36__1__0	max_left=33	max_left_minus=31	max_left_plus=33	max_min_left=16	max_min_left_minus=16	max_min_left_plus=16	max_min_right=17	max_min_right_minus=17	max_min_right_plus=17	max_right=33	max_right_minus=33	max_right_plus=33	min_overlap_score=490	pos_hash_score=40	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=59	total_reads=66
JC	63		REL606	3686242	-1	REL606	4356099	1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=9	flanking_left=36	flanking_right=36	key=REL606__3686242__0__REL606__4356090__1__9____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=25	max_right_minus=0	max_right_plus=25	min_overlap_score=29	pos_hash_score=6	reject=NJ	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=9	total_reads=9
JC	108		REL606	3714595	-1	REL606	3714830	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__3714595__0__REL606__3714830__1__0____36__36__0__0	max_left=29	max_left_minus=29	max_left_plus=19	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=10	max_min_right_minus=1	max_min_right_plus=10	max_right=10	max_right_minus=1	max_right_plus=10	min_overlap_score=11	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	32		REL606	3755752	-1	REL606	3755756	1	0	alignment_overlap=0	coverage_minus=17	coverage_plus=11	flanking_left=36	flanking_right=36	key=REL606__3755752__0__REL606__3755756__1__0____36__36__0__0	max_left=35	max_left_minus=35	max_left_plus=35	max_min_left=16	max_min_left_minus=16	max_min_left_plus=11	max_min_right=14	max_min_right_minus=14	max_min_right_plus=14	max_right=29	max_right_minus=29	max_right_plus=28	min_overlap_score=237	pos_hash_score=19	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=28	total_reads=39
JC	222		REL606	4042162	-1	REL606	4353247	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__4042162__0__REL606__4353247__0__-4__CATN__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CATN
JC	82		REL606	4052527	1	REL606	4236652	-1	0	alignment_overlap=11	coverage_minus=0	coverage_plus=6	flanking_left=36	flanking_right=36	key=REL606__4052538__1__REL606__4236652__0__11____36__36__1__0	max_left=6	max_left_minus=0	max_left_plus=6	max_min_left=6	max_min_left_minus=0	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=21	max_right_minus=0	max_right_plus=21	min_overlap_score=29	pos_hash_score=5	reject=NJ	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=11	side_2_redundant=0	total_non_overlap_reads=6	total_reads=6
JC	227		REL606	4074151	-1	REL606	4074164	-1	0	alignment_overlap=8	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__4074151__0__REL606__4074172__0__8____36__36__0__0	max_left=25	max_left_minus=25	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=1	max_right_minus=1	max_right_plus=0	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	56		REL606	4095773	1	REL606	4176666	1	0	alignment_overlap=8	coverage_minus=10	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__4095773__1__REL606__4176658__1__8____36__36__0__0	max_left=27	max_left_minus=27	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=7	max_min_right_minus=7	max_min_right_plus=0	max_right=7	max_right_minus=7	max_right_plus=0	min_overlap_score=42	pos_hash_score=8	reject=NJ	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=10	total_reads=10
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